ArticleVirology journal2009
Molecular characterization and phylogenetic analysis of the complete genome of a porcine sapovirus from Chinese swine.
Article in Virology journal, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
7 citing papers in PubMed, 11 citations in OpenAlex.
- High Genetic Diversity of Porcine Sapovirus From Diarrheic Piglets in Yunnan Province, China.Frontiers in veterinary science · 2022Article
- Serological and molecular investigation of porcine sapovirus infection in piglets in Xinjiang, China.Tropical animal health and production · 2016Article
- Spatiotemporal trends in the discovery of new swine infectious agents.Veterinary research · 2015Review
- Complete sequence and phylogenetic analysis of a porcine sapovirus strain isolated from western China.Virus genes · 2014Article
- Complete genome of a porcine calicivirus strain in Anhui province, China, is significantly shorter than that of the other Chinese strain.Journal of virology · 2012Article
- RT-PCR test for detecting porcine sapovirus in weanling piglets in Hunan Province, China.Tropical animal health and production · 2012Article
- Viruses in diarrhoeic dogs include novel kobuviruses and sapoviruses.The Journal of general virology · 2011Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
9 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundPorcine sapovirus was first identified in the United States in 1980, hitherto, several Asian countries have detected this virus. In 2008, the first outbreak of gastroenteritis in piglets caused by porcine sapovirus in China was reported. The complete genome of the identified SaV strain Ch-sw-sav1 was sequenced and analyzed to provide gene profile for this outbreak.
methodsThe whole genome of Ch-sw-sav1 was amplified by RT-PCR and was sequenced. Sequence alignment of the complete genome or RNA dependent RNA polymerase (RdRp) gene was done. 3' end of ORF2 with 21-nt nucleotide insertion was further analyzed using software.
resultsSequence analysis indicated that the genome of Ch-sw-sav1 was 7541 nucleotide long with two ORFs, excluding the 17 nucleotides ploy (A) at the 3' end. Phylogenetic analysis based on part of RdRp gene of this strain showed that it was classified into subgroup GIII. Sequence alignment indicated that there was an inserted 21-nt long nucleotide sequence at the 3' end of ORF2. The insertion showed high antigenicity index comparing to other regions in ORF2.
conclusionCh-sw-sav1 shared similar genetic profile with an American PEC strain except the 21-nt nucleotide at the 3' end of ORF2. The insert sequence shared high identity with part gene of Sus scrofa clone RP44-484M10.
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Registered trials
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