ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2010
A new SNP haplotype associated with blue disease resistance gene in cotton (Gossypium hirsutum L.).
Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
30 citing papers in PubMed, 93 citations in OpenAlex.
- Genomic characterization of a MAGIC population containing introgressions from four tetraploid Gossypium species.The plant genome · 2026Article
- Genome-wide exploration of bacterial leaf blight resistance and fine mapping of major resistance gene (Bb13) in upland cotton (Gossypium hirsutum L.).The plant genome · 2026Article
- Allele and transcriptome mining in Gossypium hirsutum reveals variation in candidate genes at genetic loci affecting cotton fiber quality and textile flammability.BMC plant biology · 2025Article
- The brown fiber phenotype in cotton line SA-40 is linked to a missing Ty3-like retrotransposon upstream of theFrontiers in plant science · 2025Article
- The Hypersensitive Response to Plant Viruses.Viruses · 2023Review
- Cotton leafroll dwarf disease: An enigmatic viral disease in cotton.Molecular plant pathology · 2023Review
- Genome-wide association study of fiber yield-related traits uncovers the novel genomic regions and candidate genes in Indian upland cotton (Frontiers in plant science · 2023Article
- Genomic interrogation of a MAGIC population highlights genetic factors controlling fiber quality traits in cotton.Communications biology · 2022Article
- Antibodies for the Coat Protein of Cotton Leafroll Dwarf Virus DetectFrontiers in plant science · 2022Article
- Virus Diseases of Cereal and Oilseed Crops in Australia: Current Position and Future Challenges.Viruses · 2021Review
- Mapping-by-sequencing the locus of EMS-induced mutation responsible for tufted-fuzzless seed phenotype in cotton.Molecular genetics and genomics : MGG · 2021Article
- Effect of Cotton Leafroll Dwarf Virus on Physiological Processes and Yield of Individual Cotton Plants.Frontiers in plant science · 2021Article
- Elucidation of sequence polymorphism in fuzzless-seed cotton lines.Molecular genetics and genomics : MGG · 2021Article
- A new SNP genotyping technology Target SNP-seq and its application in genetic analysis of cucumber varieties.Scientific reports · 2020Article
- An EMS-induced mutation in a tetratricopeptide repeat-like superfamily protein gene (Ghir_A12G008870) on chromosome A12 is responsible for the liTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020Article
- A novel variant of Gh_D02G0276 is required for root-knot nematode resistance on chromosome 14 (D02) in Upland cotton.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2019Article
- Genetic and transcriptomic dissection of the fiber length trait from a cotton (Gossypium hirsutum L.) MAGIC population.BMC genomics · 2019Article
- The P450 gene CYP749A16 is required for tolerance to the sulfonylurea herbicide trifloxysulfuron sodium in cotton (Gossypium hirsutum L.).BMC plant biology · 2018Article
- Association mapping and favourable QTL alleles for fibre quality traits in Upland cotton (Gossypium hirsutum L.).Journal of genetics · 2018Article
- The GhTT2_A07 gene is linked to the brown colour and natural flame retardancy phenotypes of Lc1 cotton (Gossypium hirsutum L.) fibres.Journal of experimental botany · 2016Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
4 authors at 3 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Resistance to cotton blue disease (CBD) was evaluated in 364 F(2.3) families of three populations derived from resistant variety 'Delta Opal'. The CBD resistance in 'Delta Opal' was controlled by one single dominant gene designated Cbd. Two simple sequence repeat (SSR) markers were identified as linked to Cbd by bulked segregant analysis. Cbd resides at the telomere region of chromosome 10. SSR marker DC20027 was 0.75 cM away from Cbd. DC20027 marker fragments amplified from 3 diploid species and 13 cotton varieties whose CBD resistance was known were cloned and sequenced. One single nucleotide polymorphism (SNP) was identified at the 136 th position by sequence alignment analysis. Screening SNP markers previously mapped on chromosome 10 identified an additional 3 SNP markers that were associated with Cbd. A strong association between a haplotype based on four SNP markers and Cbd was developed. This demonstrates one of the first examples in cotton where SNP markers were used to effectively tag a trait enabling marker-assisted selection for high levels of CBD resistance in breeding programs.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.