Evidence map›Paper›PMID 19959718›Full record

ArticleJournal of the American Society of Nephrology : JASN2010

Whole-genome linkage and association scan in primary, nonsyndromic vesicoureteric reflux.

Heather J Cordell, Rebecca Darlay, Pimphen Charoen, Aisling Stewart, Ambrose M Gullett, Heather J Lambert, Sue Malcolm, Sally A Feather, Timothy H J Goodship, Adrian S Woolf and 3 more

Abstract read
In one paragraph

Article in Journal of the American Society of Nephrology : JASN, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed, 1 pooled it
8.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 1 synthesis or guideline pooled it, 61 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Genetics of Vesicoureteral Reflux.Current genomics · 2016
    Article
  15. Review
  16. Urinary tract effects of HPSE2 mutations.Journal of the American Society of Nephrology : JASN · 2015
    Article
  17. Relevance of current guidelines in the management of VUR.European journal of pediatrics · 2014
    Review
  18. Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 2 countries.

Heather J CordellInstitute of Human Genetics, Newcastle University, International Centre for Life, Newcastle upon Tyne, NE1 3BZ, UK.
Rebecca Darlay
Pimphen Charoen
Aisling Stewart
Ambrose M Gullett
Heather J Lambert
Sue Malcolm
Sally A Feather
Timothy H J Goodship
Adrian S Woolf
Rajko B Kenda
Judith A Goodship
UK VUR Study Group
University College London · GBMahidol University · THNewcastle University · GBRoyal Victoria Infirmary · GBSt James's University Hospital · GB

Funding

Medical Research Council G0600040Wellcome Trust 066647Wellcome Trust 070327Wellcome Trust 074524Wellcome Trust 087436
6 · The paper itself

Abstract

Primary vesicoureteric reflux accounts for approximately 10% of kidney failure requiring dialysis or transplantation, and sibling studies suggest a large genetic component. Here, we report a whole-genome linkage and association scan in primary, nonsyndromic vesicoureteric reflux and reflux nephropathy. We used linkage and family-based association approaches to analyze 320 white families (661 affected individuals, generally from families with two affected siblings) from two populations (United Kingdom and Slovenian). We found modest evidence of linkage but no clear overlap with previous studies. We tested for but did not detect association with six candidate genes (AGTR2, HNF1B, PAX2, RET, ROBO2, and UPK3A). Family-based analysis detected associations with one single-nucleotide polymorphism (SNP) in the UK families, with three SNPs in the Slovenian families, and with three SNPs in the combined families. A case-control analysis detected associations with three additional SNPs. The results of this study, which is the largest to date investigating the genetics of reflux, suggest that major loci may not exist for this common renal tract malformation within European populations.

Indexed as

Case-Control StudiesData Interpretation, StatisticalGenetic LinkageHepatocyte Nuclear Factor 1-betaHumansLogistic ModelsMembrane GlycoproteinsPAX2 Transcription FactorPolymorphism, Single NucleotideProto-Oncogene Proteins c-retReceptor, Angiotensin, Type 2Receptors, ImmunologicRoundabout ProteinsSiblingsSloveniaUnited KingdomHepatocyte Nuclear Factor 1-betaHNF1B protein, humanMembrane GlycoproteinsPAX2 protein, humanPAX2 Transcription FactorProto-Oncogene Proteins c-retReceptor, Angiotensin, Type 2Receptors, ImmunologicRET protein, humanROBO2 protein, humanRoundabout ProteinsUPK3A protein, humanUroplakin III

Identifiers

PMID19959718
PMCPMC2799286
OpenAlexW2097485721

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.