Evidence map›Paper›PMID 19959664›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2009

Reconstitution of bacterial outer membrane TonB-dependent transporters in planar lipid bilayer membranes.

Eshwar Udho, Karen S Jakes, Susan K Buchanan, Karron J James, Xiaoxu Jiang, Phillip E Klebba, Alan Finkelstein

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
1.3field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
  2. Advances in understanding Ton and Tol system motor proteins.Biochemical Society transactions · 2026
    Review
  3. The Name Is Barrel, β-Barrel.Methods in molecular biology (Clifton, N.J.) · 2024
    Article
  4. Review
  5. Review
  6. Article
  7. Ton motor complexes.Current opinion in structural biology · 2021
    Review
  8. Structure and Stoichiometry of the Ton Molecular Motor.International journal of molecular sciences · 2020
    Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Global redesign of a native β-barrel scaffold.Biochimica et biophysica acta · 2016
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

Eshwar UdhoDepartment of Physiology and Biophysics, Albert Einstein College of Medicine, Bronx, NY 10461, USA.
Karen S Jakes
Susan K Buchanan
Karron J James
Xiaoxu Jiang
Phillip E Klebba
Alan Finkelstein
Albert Einstein College of Medicine · USUniversity of Oklahoma · USMcGill University · CANational Institutes of Health · US

Funding

INTERACTION OF MODEL SYNAPTIC VESICLES WITH LIPID BILAYR01GM029210 · NIGMS · YESHIVA UNIVERSITY · PI FINKELSTEIN, ALAN · 1985 to 2013
$6.0M
GATING OF PROTEIN CHANNELS IN LIPID BILAYER MEMBRANESR37GM029210 · NIGMS · YESHIVA UNIVERSITY · PI FINKELSTEIN, ALAN · 1995 to 2004
$3.5M
structural characterization of iron uptake from human transferrinZIADK036143 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI BUCHANAN, SUSAN · 2009 to 2013
$3.1M
MOLECULAR BIOPHYSICS TRAINING GRANTT32GM008572 · NIGMS · YESHIVA UNIVERSITY · PI BRENOWITZ, MICHAEL D. · 1995 to 2009
$3.0M
LOOP DELETION MUTAGENESIS OF FEPAR01GM053836 · NIGMS · UNIVERSITY OF OKLAHOMA NORMAN · PI KLEBBA, PHILLIP E · 1995 to 2009
$2.4M
CIHR MOP 14133CIHR PRG 82674Intramural NIH HHSNIGMS NIH HHS GM008572NIGMS NIH HHS GM29210NIGMS NIH HHS GM53836NIGMS NIH HHS R01 GM029210NIGMS NIH HHS R01 GM053836NIGMS NIH HHS R37 GM029210NIGMS NIH HHS T32 GM008572
6 · The paper itself

Abstract

Micronutrients such as siderophore-bound iron and vitamin B(12) cross the outer membrane of gram-negative bacteria through a group of 22-stranded beta-barrel proteins. They share the unusual feature that their N-terminal end inserts from the periplasmic side into the beta-barrel and plugs the lumen. Transport results from energy-driven movement of TonB protein, which either pulls the plug out of the barrel or causes it to rearrange within the barrel. Attempts to reconstitute native plugged channels in an ion-conducting state in lipid bilayer membranes have so far been unsuccessful. We, however, have discovered that if the cis solution contained 4 M urea, then, with the periplasmic side of the channel facing that solution, macroscopic conductances and single channel events could be observed. These results were obtained with FhuA, Cir, and BtuB; for the former two, the channels were closed by removing the 4 M urea. Channels generated by 4 M urea exposure were not a consequence of general protein denaturation, as their ligand-binding properties were preserved. Thus, with FhuA, addition of ferrichrome (its siderophore) to the trans, extracellular-facing side reversibly inhibited 4 M urea-induced channel opening and blocked the channels. With Cir, addition of colicin Ia (the microbial toxin that targets Cir) to the trans, extracellular-facing side prevented 4 M urea-induced channel opening. We hypothesize that 4 M urea reversibly unfolds the FhuA and Cir plugs, thereby opening an ion-conducting pathway through these channels, and that this mimics to some extent the in vivo action of TonB on these plugs.

Indexed as

Lipid BilayersBacterial ProteinsGram-Negative BacteriaMembrane ProteinsUreaBacterial ProteinsLipid BilayersMembrane ProteinstonB protein, BacteriaUrea

Identifiers

PMID19959664
PMCPMC2799797
OpenAlexW2101191100

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.