ArticleAdvances in bioinformatics2009
FlowFP: A Bioconductor Package for Fingerprinting Flow Cytometric Data.
Article in Advances in bioinformatics, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.
What it found
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The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
22 citing papers in PubMed.
- Self-explaining artificial intelligence for the classification of B cell non-Hodgkin lymphoma: A diagnostic decision support study.PLoS medicine · 2026Article
- Biofilm detachment significantly affects biological stability of drinking water during intermittent water supply in a pilot scale water distribution system.Scientific reports · 2025Article
- Association of overweight/obesity and insulin resistance with activation of circulating innate lymphoid cells in women after gestational diabetes mellitus.Frontiers in immunology · 2025Observational
- Advances in automated real-time flow cytometry for monitoring of bioreactor processes.Engineering in life sciences · 2022Review
- Automatic, fast, hierarchical, and non-overlapping gating of flow cytometric data with flowEMMi v2.Computational and structural biotechnology journal · 2022Article
- Computational Analysis of Microbial Flow Cytometry Data.mSystems · 2021Review
- Guidelines for the use of flow cytometry and cell sorting in immunological studies (second edition).European journal of immunology · 2019Article
- Growth-dependent recombinant product formation kinetics can be reproduced through engineering of glucose transport and is prone to phenotypic heterogeneity.Microbial cell factories · 2019Article
- Human microglia regional heterogeneity and phenotypes determined by multiplexed single-cell mass cytometry.Nature neuroscience · 2019Article
- Data-Driven Flow Cytometry Analysis.Methods in molecular biology (Clifton, N.J.) · 2019Review
- Vascular Health Profile predicts cardiovascular outcomes in patients with diabetes.Cytometry. Part B, Clinical cytometry · 2017Article
- Common Variable Immunodeficiency patients with a phenotypic profile of immunosenescence present with thrombocytopenia.Scientific reports · 2017Article
- A benchmark for evaluation of algorithms for identification of cellular correlates of clinical outcomes.Cytometry. Part A : the journal of the International Society for Analytical Cytology · 2016Article
- Identification and visualization of multidimensional antigen-specific T-cell populations in polychromatic cytometry data.Cytometry. Part A : the journal of the International Society for Analytical Cytology · 2015Article
- Studying the human immunome: the complexity of comprehensive leukocyte immunophenotyping.Current topics in microbiology and immunology · 2014Review
- Cytometric fingerprints: evaluation of new tools for analyzing microbial community dynamics.Frontiers in microbiology · 2014Article
- Immunologic consequences of chemotherapy for ovarian cancer: impaired responses to the influenza vaccine.Vaccine · 2013Article
- GenePattern flow cytometry suite.Source code for biology and medicine · 2013Article
- Computational analysis of high-throughput flow cytometry data.Expert opinion on drug discovery · 2012Review
- Analysis of B cell subsets following pancreatic islet cell transplantation in a patient with type 1 diabetes by cytometric fingerprinting.Journal of immunological methods · 2011Article
Corrections and comments
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Authors and funding
2 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
A new software package called flowFP for the analysis of flow cytometry data is introduced. The package, which is tightly integrated with other Bioconductor software for analysis of flow cytometry, provides tools to transform raw flow cytometry data into a form suitable for direct input into conventional statistical analysis and empirical modeling software tools. The approach of flowFP is to generate a description of the multivariate probability distribution function of flow cytometry data in the form of a "fingerprint." As such, it is independent of a presumptive functional form for the distribution, in contrast with model-based methods such as Gaussian Mixture Modeling. FlowFP is computationally efficient and able to handle extremely large flow cytometry data sets of arbitrary dimensionality. Algorithms and software implementation of the package are described. Use of the software is exemplified with applications to data quality control and to the automated classification of Acute Myeloid Leukemia.
Identifiers
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.