Evidence map›Paper›PMID 19955088›Full record

ArticleMolecular & cellular proteomics : MCP2010

Quantitative nuclear proteomics identifies mTOR regulation of DNA damage response.

Sricharan Bandhakavi, Young-Mi Kim, Seung-Hyun Ro, Hongwei Xie, Getiria Onsongo, Chang-Bong Jun, Do-Hyung Kim, Timothy J Griffin

Open access · hybridAbstract read
In one paragraph

Article in Molecular & cellular proteomics : MCP, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 44 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Review
  6. SFPQ Promotes Lung Cancer MalignancyFrontiers in oncology · 2022
    Article
  7. Article
  8. Article
  9. mTORC Inhibitors as Broad-Spectrum Therapeutics for Age-Related Diseases.International journal of molecular sciences · 2018
    Review
  10. Article
  11. Article
  12. Article
  13. [Rapamycin decreases irradiation-induced hematopoietic system damage].Zhonghua xue ye xue za zhi = Zhonghua xueyexue zazhi · 2015
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Sricharan BandhakaviDepartment of Biochemistry, University of Minnesota, Minneapolis, Minnesota 55455, USA.
Young-Mi Kim
Seung-Hyun Ro
Hongwei Xie
Getiria Onsongo
Chang-Bong Jun
Do-Hyung Kim
Timothy J Griffin
University of Minnesota · US

Funding

Obesity and Energy Metabolism CoreP30DK050456 · NIDDK · UNIVERSITY OF MINNESOTA TWIN CITIES · PI BERNLOHR, DAVID A · 1995 to 2015
$17.0M
Mechanisms of Nutrient-Regulated mTOR SignalingR01DK072004 · NIDDK · UNIVERSITY OF MINNESOTA · PI KIM, DO-HYUNG · 2006 to 2008
$801k
Mechanism of Nutrient-Regulated mTOR SignalingR56DK072004 · NIDDK · UNIVERSITY OF MINNESOTA · PI KIM, DO-HYUNG · 2009 to 2009
$363k
NIDDK NIH HHS DK072004NIDDK NIH HHS P30 DK050456NIDDK NIH HHS P30 DK50456NIDDK NIH HHS R01 DK072004NIDDK NIH HHS R56 DK072004
6 · The paper itself

Abstract

Cellular nutritional and energy status regulates a wide range of nuclear processes important for cell growth, survival, and metabolic homeostasis. Mammalian target of rapamycin (mTOR) plays a key role in the cellular responses to nutrients. However, the nuclear processes governed by mTOR have not been clearly defined. Using isobaric peptide tagging coupled with linear ion trap mass spectrometry, we performed quantitative proteomics analysis to identify nuclear processes in human cells under control of mTOR. Within 3 h of inhibiting mTOR with rapamycin in HeLa cells, we observed down-regulation of nuclear abundance of many proteins involved in translation and RNA modification. Unexpectedly, mTOR inhibition also down-regulated several proteins functioning in chromosomal integrity and up-regulated those involved in DNA damage responses (DDRs) such as 53BP1. Consistent with these proteomic changes and DDR activation, mTOR inhibition enhanced interaction between 53BP1 and p53 and increased phosphorylation of ataxia telangiectasia mutated (ATM) kinase substrates. ATM substrate phosphorylation was also induced by inhibiting protein synthesis and suppressed by inhibiting proteasomal activity, suggesting that mTOR inhibition reduces steady-state (abundance) levels of proteins that function in cellular pathways of DDR activation. Finally, rapamycin-induced changes led to increased survival after radiation exposure in HeLa cells. These findings reveal a novel functional link between mTOR and DDR pathways in the nucleus potentially operating as a survival mechanism against unfavorable growth conditions.

Indexed as

DNA DamageCell NucleusCycloheximideHeLa CellsHumansIntracellular Signaling Peptides and ProteinsIsotope LabelingProteasome Endopeptidase ComplexProteasome InhibitorsProtein BiosynthesisProtein Serine-Threonine KinasesProteomeProteomicsRadiation, IonizingRadiation ToleranceReproducibility of ResultsCycloheximideIntracellular Signaling Peptides and ProteinsMTOR protein, humanProteasome Endopeptidase ComplexProteasome InhibitorsProtein Serine-Threonine KinasesProteomeSirolimusTOR Serine-Threonine Kinases

Identifiers

PMID19955088
PMCPMC2830849
OpenAlexW2124645897

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.