Evidence map›Paper›PMID 19955084›Full record

ArticleMolecular & cellular proteomics : MCP2010

Endogenous peptide discovery of the rat circadian clock: a focused study of the suprachiasmatic nucleus by ultrahigh performance tandem mass spectrometry.

Ji Eun Lee, Norman Atkins, Nathan G Hatcher, Leonid Zamdborg, Martha U Gillette, Jonathan V Sweedler, Neil L Kelleher

Open access · hybridAbstract read
In one paragraph

Article in Molecular & cellular proteomics : MCP, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 54 papers.

0numbers the graph read from it
0cells of the map it votes in
54citing papers in PubMed
2.4field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

54 citing papers in PubMed, 89 citations in OpenAlex.

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  18. The influence of neuronal electrical activity on the mammalian central clock metabolome.Metabolomics : Official journal of the Metabolomic Society · 2018
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Ji Eun LeeDepartment of Chemistry, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, USA.
Norman Atkins
Nathan G Hatcher
Leonid Zamdborg
Martha U Gillette
Jonathan V Sweedler
Neil L Kelleher
University of Illinois Urbana-Champaign · US

Funding

The UIUC Neuroproteomics Center on Cell-Cell SignalingP30DA018310 · NIDA · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI Elena V Romanova · 2004 to 2026
$24.9M
Eukaryotic Post-Translational ModificationsR01GM067193 · NIGMS · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI KELLEHER, NEIL L · 2003 to 2015
$4.0M
The Neurometabolome of a Sensory Neuronal NetworkR01DE018866 · NIDCR · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI SWEEDLER, JONATHAN V. · 2007 to 2011
$1.6M
Neuropeptidomics of Clock-to-Clock CouplingR01HL092571 · NHLBI · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI GILLETTE, MARTHA U · 2009 to 2010
$967k
NHLBI NIH HHS HL092571NHLBI NIH HHS R01 HL092571NIDA NIH HHS DA018310NIDA NIH HHS P30 DA018310NIDCR NIH HHS DE018866NIDCR NIH HHS R01 DE018866NIGMS NIH HHS GM 067193-07NIGMS NIH HHS R01 GM067193
6 · The paper itself

Abstract

Understanding how a small brain region, the suprachiasmatic nucleus (SCN), can synchronize the body's circadian rhythms is an ongoing research area. This important time-keeping system requires a complex suite of peptide hormones and transmitters that remain incompletely characterized. Here, capillary liquid chromatography and FTMS have been coupled with tailored software for the analysis of endogenous peptides present in the SCN of the rat brain. After ex vivo processing of brain slices, peptide extraction, identification, and characterization from tandem FTMS data with <5-ppm mass accuracy produced a hyperconfident list of 102 endogenous peptides, including 33 previously unidentified peptides, and 12 peptides that were post-translationally modified with amidation, phosphorylation, pyroglutamylation, or acetylation. This characterization of endogenous peptides from the SCN will aid in understanding the molecular mechanisms that mediate rhythmic behaviors in mammals.

Indexed as

Amino Acid SequenceAnimalsCircadian RhythmFemaleMolecular Sequence DataMutant ProteinsNerve Tissue ProteinsNeuropeptidesPeptide FragmentsPeptidesRatsRats, Long-EvansSuprachiasmatic NucleusTandem Mass Spectrometrycerebellinmanserin, ratMutant ProteinsNerve Tissue ProteinsNeuropeptidesPeptide FragmentsPeptides

Identifiers

PMID19955084
PMCPMC2830840
OpenAlexW1968820863

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.