Evidence map›Paper›PMID 19954209›Full record

ArticleBiochemistry2009

Characterization of [4Fe-4S]-containing and cluster-free forms of Streptomyces WhiD.

Jason C Crack, Chris D den Hengst, Piotr Jakimowicz, Sowmya Subramanian, Michael K Johnson, Mark J Buttner, Andrew J Thomson, Nick E Le Brun

Open access · greenAbstract read
In one paragraph

Article in Biochemistry, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 75 citations in OpenAlex.

  1. Nitrite Causes Nitrosative Stress to Iron Sulfur Clusters.Journal of the American Chemical Society · 2025
    Article
  2. Article
  3. Structural basis of dual activation of cell division by the actinobacterial transcription factors WhiA and WhiB.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  4. The Elusive Mononitrosylated [FeAngewandte Chemie (International ed. in English) · 2022
    Article
  5. Article
  6. WblA, a global regulator of antibiotic biosynthesis in Streptomyces.Journal of industrial microbiology & biotechnology · 2021
    Review
  7. Article
  8. Interaction of theThe Journal of biological chemistry · 2020
    Article
  9. Article
  10. A Novel Two-Component System, Encoded by the sFrontiers in microbiology · 2019
    Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Iron-sulfur cluster exchange reactions mediated by the human Nfu protein.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2016
    Article
  17. Article
  18. Biochemical properties of Paracoccus denitrificans FnrP: reactions with molecular oxygen and nitric oxide.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2016
    Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Jason C CrackCentre for Molecular and Structural Biochemistry, School of Chemistry, University of East Anglia, Norwich NR4 7TJ, UK.
Chris D den Hengst
Piotr Jakimowicz
Sowmya Subramanian
Michael K Johnson
Mark J Buttner
Andrew J Thomson
Nick E Le Brun
University of Georgia · US

Funding

Assembly of Biological Iron-Sulfur ClustersR01GM062524 · NIGMS · UNIVERSITY OF GEORGIA (UGA) · PI JOHNSON, MICHAEL K. · 2001 to 2012
$2.7M
Assembly and Repair of Biological Iron-Sulfur ClustersR37GM062524 · NIGMS · UNIVERSITY OF GEORGIA · PI JOHNSON, MICHAEL K. · 2014 to 2018
$1.7M
Biotechnology and Biological Sciences Research Council BB/D00926X/1Biotechnology and Biological Sciences Research Council BB/G019347/1Biotechnology and Biological Sciences Research Council BBS/E/J/00000015NIGMS NIH HHS GM62524NIGMS NIH HHS R01 GM062524NIGMS NIH HHS R37 GM062524Wellcome Trust
6 · The paper itself

Abstract

WhiD, a member of the WhiB-like (Wbl) family of iron-sulfur proteins found exclusively within the actinomycetes, is required for the late stages of sporulation in Streptomyces coelicolor. Like all other Wbl proteins, WhiD has not so far been purified in a soluble form that contains a significant amount of cluster, and characterization has relied on cluster-reconstituted protein. Thus, a major goal in Wbl research is to obtain and characterize native protein containing iron-sulfur clusters. Here we report the analysis of S. coelicolor WhiD purified anaerobically from Escherichia coli as a soluble protein containing a single [4Fe-4S](2+) cluster ligated by four cysteines. Upon exposure to oxygen, spectral features associated with the [4Fe-4S] cluster were lost in a slow reaction that unusually yielded apo-WhiD directly without significant concentrations of cluster intermediates. This process was found to be highly pH dependent with an optimal stability observed between pH 7.0 and pH 8.0. Low molecular weight thiols, including a mycothiol analogue and thioredoxin, exerted a small but significant protective effect against WhiD cluster loss, an activity that could be of physiological importance. [4Fe-4S](2+) WhiD was found to react much more rapidly with superoxide than with either oxygen or hydrogen peroxide, which may also be of physiological significance. Loss of the [4Fe-4S] cluster to form apoprotein destabilized the protein fold significantly but did not lead to complete unfolding. Finally, apo-WhiD exhibited negligible activity in an insulin-based disulfide reductase assay, demonstrating that it does not function as a general protein disulfide reductase.

Indexed as

Amino Acid SequenceIron-Sulfur ProteinsMolecular Sequence DataProtein StabilitySolubilityStreptomyces coelicolorTranscription FactorsIron-Sulfur ProteinsTranscription FactorsWhiD protein, Streptomyces coelicolor

Identifiers

PMID19954209
PMCPMC2815329
OpenAlexW2160719144

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.