Is sequencing enlightenment ending the dark age of the transcriptome?

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

Who cites it

16 citing papers in PubMed.

1. RNA-seq analysis reveals an early defense response to tomato leaf curl New Delhi virus in potato cultivar Kufri Bahar.Functional & integrative genomics · 2023
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2. Dynamic nanopore long-read sequencing analysis of HIV-1 splicing events during the early steps of infection.Retrovirology · 2020
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3. SCREENED: A Multistage Model of Thyroid Gland Function for Screening Endocrine-Disrupting Chemicals in a Biologically Sex-Specific Manner.International journal of molecular sciences · 2020
   Review
4. NeuroMuscleDB: a Database of Genes Associated with Muscle Development, Neuromuscular Diseases, Ageing, and Neurodegeneration.Molecular neurobiology · 2019
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5. Intergenic disease-associated regions are abundant in novel transcripts.Genome biology · 2017
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6. Identification of Putative Biomarkers for the Early Stage of Porcine Spermatogonial Stem Cells Using Next-Generation Sequencing.PloS one · 2016
   Article
7. DGEclust: differential expression analysis of clustered count data.Genome biology · 2015
   Article
8. The persistent contributions of RNA to eukaryotic gen(om)e architecture and cellular function.Cold Spring Harbor perspectives in biology · 2014
   Review
9. The DNA damage response: the omics era and its impact.DNA repair · 2014
   Review
10. Whole-transcriptome RNAseq analysis from minute amount of total RNA.Nucleic acids research · 2011
    Article
11. Protocol dependence of sequencing-based gene expression measurements.PloS one · 2011
    Article
12. Sensitive gene fusion detection using ambiguously mapping RNA-Seq read pairs.Bioinformatics (Oxford, England) · 2011
    Article
13. RNA sequencing: advances, challenges and opportunities.Nature reviews. Genetics · 2011
    Review
14. Cost-effective sequencing of full-length cDNA clones powered by a de novo-reference hybrid assembly.PloS one · 2010
    Article
15. Genomic imprinting-an epigenetic gene-regulatory model.Current opinion in genetics & development · 2010
    Review
16. RNA dust: where are the genes?DNA research : an international journal for rapid publication of reports on genes and genomes · 2010
    Review

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

Authors and funding

1 author.

Funding

No grant is acknowledged in the PubMed record.

Abstract

PubMed holds no abstract for this paper.

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