Evidence map›Paper›PMID 19952110›Full record

ArticleGenes & development2009

RPS25 is essential for translation initiation by the Dicistroviridae and hepatitis C viral IRESs.

Dori M Landry, Marla I Hertz, Sunnie R Thompson

Open access · diamondAbstract read
In one paragraph

Article in Genes & development, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 142 papers.

0numbers the graph read from it
0cells of the map it votes in
142citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

142 citing papers in PubMed, 194 citations in OpenAlex.

  1. Article
  2. Reassessment of IRES Element Activity inInternational journal of molecular sciences · 2026
    Article
  3. Article
  4. Article
  5. Specialized ribosomes: integrating new insights and current challenges.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2025
    Review
  6. Ribosomal protein S25 promotes cell cycle entry for a productive BK polyomavirus infection.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2025
    Article
  7. Article
  8. Review
  9. Ribosome Structural Changes Dynamically Affect Ribosome Function.International journal of molecular sciences · 2024
    Review
  10. Article
  11. Article
  12. Archaea/eukaryote-specific ribosomal proteins - guardians of a complex structure.Computational and structural biotechnology journal · 2023
    Review
  13. Article
  14. Article
  15. Review
  16. Ribosomal RNA 2'-Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  17. Article
  18. Review
  19. Ribosomal control in RNA virus-infected cells.Frontiers in microbiology · 2022
    Review
  20. Article

82 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Dori M LandryDepartment of Microbiology, University of Alabama at Birmingham, Birmingham, Alabama 35294, USA.
Marla I Hertz
Sunnie R Thompson
University of Alabama at Birmingham · US

Funding

XRAY CRYSTALLOGRAPHYP30CA013148 · NCI · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI Robert S Welner · 1985 to 2026
$165.9M
BASIC MECHANISMS OF LUNG DISEASEST32HL007553 · NHLBI · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI YOTHER, JANET L · 1985 to 2007
$2.2M
Mechanism of IRES-Mediated Translation InitiationR01GM084547 · NIGMS · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI THOMPSON, SUNNIE R · 2009 to 2013
$1.4M
NCI NIH HHS CA-13148-31NCI NIH HHS P30 CA013148NHLBI NIH HHS 5T32HL007553NHLBI NIH HHS T32 HL007553NIGMS NIH HHS GM084547NIGMS NIH HHS R01 GM084547
6 · The paper itself

Abstract

Most eukaryotic mRNAs are translated using a cap-dependent mechanism of translation. However, approximately 10% of mammalian mRNAs initiate translation using a cap-independent mechanism that is not well understood. These mRNAs contain an internal ribosome entry site (IRES) located in the 5' untranslated region. The cricket paralysis virus (CrPV) intergenic region IRES (IGR IRES) functions in yeast, mammals, and plants, and does not require any translation initiation factors. We used yeast genetics to understand how ribosomes are recruited directly to the mRNA by an IRES. We found that Rps25p has an essential role in CrPV IGR IRES activity in yeast and mammalian cells but not in cap-dependent translation. Purified 40S ribosomal subunits lacking Rps25 are unable to bind to the IGR IRES in vitro. The hepatitis C virus (HCV) IRES also requires Rps25, demonstrating the function of Rps25 is conserved across IRES types. Yeast strains lacking Rps25 exhibit only slight defects in global translation, readthrough, ribosome biogenesis, and programmed ribosomal frameshifting. This work is the first demonstration of a ribosomal protein that is specifically required for IRES-mediated translation initiation. Our findings provide us with the beginnings of a model for the molecular interactions of an IRES with the ribosome.

Indexed as

Gene Expression RegulationProtein BiosynthesisSaccharomyces cerevisiaeAnimalsDicistroviridaeGene DeletionHeLa CellsHepacivirusHumansRibosomal ProteinsRibosome Subunits, Small, EukaryoticSaccharomyces cerevisiae ProteinsRibosomal ProteinsRPS21A protein, S cerevisiaeSaccharomyces cerevisiae Proteins

Identifiers

PMID19952110
PMCPMC2788332
OpenAlexW2161944885

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.