Evidence map›Paper›PMID 19950257›Full record

ArticleArthritis and rheumatism2009

Polymorphisms in TBX21 and STAT4 increase the risk of systemic sclerosis: evidence of possible gene-gene interaction and alterations in Th1/Th2 cytokines.

Pravitt Gourh, Sandeep K Agarwal, Dipal Divecha, Shervin Assassi, Gene Paz, Rajpreet K Arora-Singh, John D Reveille, Sanjay Shete, Maureen D Mayes, Frank C Arnett and 1 more

Open access · greenAbstract read
In one paragraph

Article in Arthritis and rheumatism, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 56 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
56citing papers in PubMed, 4 pooled it
6.7field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

56 citing papers in PubMed, 4 syntheses or guidelines pooled it, 105 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Pooled it
  5. Review
  6. Article
  7. Review
  8. Article
  9. STAT4 gene polymorphisms in human diseases.Frontiers in immunology · 2024
    Review
  10. Article
  11. Review
  12. Type I Interferons in Autoimmunity.The Journal of investigative dermatology · 2022
    Review
  13. Article
  14. Review
  15. Updates on genetics in systemic sclerosis.Inflammation and regeneration · 2021
    Review
  16. Molecular "omic" signatures in systemic sclerosis.European journal of rheumatology · 2020
    Review
  17. Review
  18. Article
  19. Article
  20. Evolving insights into the cellular and molecular pathogenesis of fibrosis in systemic sclerosis.Translational research : the journal of laboratory and clinical medicine · 2019
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 1 institution in 1 country.

Pravitt GourhUniversity of Texas Health Science Center at Houston, Houston, TX 77030, USA. pravitt.gourh@uth.tmc.edu
Sandeep K Agarwal
Dipal Divecha
Shervin Assassi
Gene Paz
Rajpreet K Arora-Singh
John D Reveille
Sanjay Shete
Maureen D Mayes
Frank C Arnett
Filemon K Tan
The University of Texas Health Science Center at Houston · US

Funding

ZOLLINGER-ELLISON SYNDROME AND DUODONAL ULCER DISEASEM01RR000073 · NCRR · UNIVERSITY OF TEXAS MEDICAL BR GALVESTON · PI ANDERSON, KARL ELMO · 1985 to 2009
$31.3M
U OF TEXAS HLTH SCI CTR HOUSTON CENTER FOR CLINICAL AND TRANSLATIONAL SCIENCESUL1RR024148 · NCRR · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI MCPHERSON, DAVID D · 2006 to 2010
$27.9M
ZOLEDRONATE VS AREDIA IN MULTIPLE MYELOMA/BREAST CANCER W /BONE DISORDERSM01RR001346 · NCRR · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI FERRER, ROBERT L · 1985 to 2008
$23.1M
Role of TGF-beta and CTGF Signaling Transgenic Mouse Models of SclerodermaP50AR054144 · NIAMS · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI TAN, FILEMON K. · 2006 to 2010
$7.7M
Two-Stage Genome-Wide Association Study in Systemic SclerosisR01AR055258 · NIAMS · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI MAYES, MAUREEN MAUREEN · 2008 to 2012
$5.9M
SCLERODERMA FAMILY REGISTRY AND DNA REPOSITORY-264002251-264002251-264002251N01AR002251 · NIAMS · WAYNE STATE UNIVERSITY · PI MAYES, MAUREEN · 2000 to 2006
$659k
Cadherin-11 Regulation of Fibroblast-like Synoviocytes in Synovial InflammationK08AR054404 · NIAMS · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI AGARWAL, SANDEEP K · 2008 to 2012
$601k
NCRR NIH HHS 3-UL-1-RR-024148NCRR NIH HHS M01 RR000073NCRR NIH HHS M01-RR-00073NCRR NIH HHS M01 RR001346NCRR NIH HHS M01-RR-01346NCRR NIH HHS UL1 RR024148NIAMS NIH HHS K08 AR054404NIAMS NIH HHS K08-AR-054404NIAMS NIH HHS N01 AR002251NIAMS NIH HHS N01-AR-0-2251NIAMS NIH HHS P50 AR054144NIAMS NIH HHS P50-AR-054144NIAMS NIH HHS R01 AR055258
6 · The paper itself

Abstract

objectiveSystemic sclerosis (SSc) is an autoimmune disease characterized by fibrosis of the skin and internal organs. Dysregulation of the immune system, including the Th1/Th2 cytokine balance, is central to the pathogenesis of SSc. This study was undertaken to investigate the hypothesis that single-nucleotide polymorphisms (SNPs) in TBX21 and STAT4, both of which are critical transcription factors that regulate the Th1/Th2 balance, are associated with SSc susceptibility.

methodsWe tested SNPs in TBX21 and STAT4 for association with SSc in 2 independent cohorts, the SSc Registry cohort (880 SSc cases and 507 controls) and the University of Texas SSc cohort (522 cases and 531 controls). Additional white control genotypes were obtained from public repositories. We also investigated for gene-gene interactions. Plasma cytokines and whole blood gene expression profiles were examined to determine functional effects of these SNPs.

resultsMultiple SNPs in TBX21 and STAT4 were found to be associated with SSc. In a combined analysis of 902 SSc patients and 4,745 controls, TT genotyping of the TBX21 rs11650354 variant revealed a recessive pattern for disease susceptibility (Pcorr=1.4x10(-15), odds ratio 3.37, 95% confidence interval 2.4-4.6). In an analysis of 1,039 SSc patients and 3,322 controls, the A allele of the STAT4 variant rs11889341 was associated with increased SSc susceptibility in a dominant pattern (Pcorr=2.4x10(-5), odds ratio 1.29, 95% confidence interval 1.2-1.5). Furthermore, we identified gene-gene interaction among the TBX21 and STAT4 variants, such that the STAT4 genotype increased the risk of SSc only in the TBX21 CC genotype group. SSc patients carrying the TBX21 CC genotype had higher interleukin-6 (IL-6) and tumor necrosis factor alpha levels, and those with the TT genotype had elevated IL-2, IL-5, IL-4, and IL-13 (Th2) levels, compared with controls. Whole blood expression profiles revealed dysregulation of type I interferon pathways in the CC group and T cell pathways in the TT group of the TBX21 SNP.

conclusionThe present results, from studies of 2 independent cohorts, indicate that SNPs in TBX21 and STAT4 contribute uniquely and interactively to SSc susceptibility, leading to altered cytokine balance and immune dysregulation.

Indexed as

Genetic Predisposition to DiseaseCohort StudiesCytokinesEpistasis, GeneticFemaleHumansMaleOligonucleotide Array Sequence AnalysisPolymorphism, Single NucleotideRisk FactorsScleroderma, SystemicSTAT4 Transcription FactorT-bet Transcription FactorT-Box Domain ProteinsTh1 CellsTh2 CellsCytokinesSTAT4 protein, humanSTAT4 Transcription FactorT-bet Transcription FactorT-Box Domain Proteins

Identifiers

PMID19950257
PMCPMC2998060
OpenAlexW2163091927

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.