Evidence map›Paper›PMID 19949809›Full record

ArticleChromosoma2010

Widespread regulation of gene expression in the Drosophila genome by the histone acetyltransferase dTip60.

Corinna Schirling, Christiane Heseding, Franziska Heise, Dörthe Kesper, Ansgar Klebes, Ludger Klein-Hitpass, Andrea Vortkamp, Daniel Hoffmann, Harald Saumweber, Ann E Ehrenhofer-Murray

Open access · greenAbstract read
PubMed Publisher
In one paragraph

Article in Chromosoma, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.4field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 20 citations in OpenAlex.

  1. Review
  2. Article
  3. Tip60's Novel RNA-Binding Function Modulates Alternative Splicing of Pre-mRNA Targets Implicated in Alzheimer's Disease.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2023
    Article
  4. Review
  5. Article
  6. Article
  7. TheG3 (Bethesda, Md.) · 2018
    Article
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Corinna SchirlingAbteilung für Genetik, Zentrum für Medizinische Biotechnologie, Universität Duisburg-Essen, Universitätsstrasse 5, 45117, Essen, Germany.
Christiane Heseding
Franziska Heise
Dörthe Kesper
Ansgar Klebes
Ludger Klein-Hitpass
Andrea Vortkamp
Daniel Hoffmann
Harald Saumweber
Ann E Ehrenhofer-Murray
University of Duisburg-Essen · DEFreie Universität Berlin · DEHumboldt-Universität zu Berlin · DEInstitut für Medizinische Informatik, Biometrie und Epidemiologie · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The MYST histone acetyltransferase (HAT) dTip60 is part of a multimeric protein complex that unites both HAT and chromatin remodeling activities. Here, we sought to gain insight into the biological functions of dTip60. Strong ubiquitous dTip60 knock-down in flies was lethal, whereas knock-down in the wing imaginal disk led to developmental defects in the wing. dTip60 localized to the nucleus in early embryos and was present in a large number of interbands on polytene chromosomes. Genome-wide expression analysis upon depletion of dTip60 in cell culture showed that it regulated a large number of genes in Drosophila, among which those with chromatin-related functions were highly enriched. Surprisingly, a significant portion of these genes were upregulated upon dTip60 loss, indicating that dTip60 has repressive as well as activating functions. dTip60 protein was directly located at promoter regions of a subset of repressed genes, suggesting a direct role in gene repression. Comparison of the gene expression signature of dTip60 downregulation with that of histone deacetylase inhibition with trichostatin A revealed a significant correlation, suggesting that the dTip60 complex recruits an HDAC-containing complex to regulate gene expression in the Drosophila genome.

Indexed as

Gene Expression RegulationGenome, InsectAnimalsDrosophilaDrosophila ProteinsHistone AcetyltransferasesProtein TransportWings, AnimalDrosophila ProteinsHistone AcetyltransferasesTip60 protein, Drosophila

Identifiers

PMID19949809
OpenAlexW2112010460

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.