Evidence map›Paper›PMID 19948792›Full record

ArticleThe Plant cell2009

Clocks in the green lineage: comparative functional analysis of the circadian architecture of the picoeukaryote ostreococcus.

Florence Corellou, Christian Schwartz, Jean-Paul Motta, El Batoul Djouani-Tahri, Frédéric Sanchez, François-Yves Bouget

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in The Plant cell, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 97 papers.

0numbers the graph read from it
0cells of the map it votes in
97citing papers in PubMed
22.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

97 citing papers in PubMed, 196 citations in OpenAlex.

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  10. Potassium rhythms couple the circadian clock to the cell cycle.bioRxiv : the preprint server for biology · 2024
    Article
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  13. Circadian regulation of metabolism across photosynthetic organisms.The Plant journal : for cell and molecular biology · 2023
    Review
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37 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Florence CorellouUniversity Pierre and Marie Curie Paris 06, Laboratoire d'Océanographie Microbiene, Observatoire Océanologique, F-66651 Banyuls/Mer, France. corellou@obs-banyuls.fr
Christian Schwartz
Jean-Paul Motta
El Batoul Djouani-Tahri
Frédéric Sanchez
François-Yves Bouget
Observatoire Océanologique de Banyuls-sur-Mer · FRLaboratoire d'Océanographie Microbienne · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Biological rhythms that allow organisms to adapt to the solar cycle are generated by endogenous circadian clocks. In higher plants, many clock components have been identified and cellular rhythmicity is thought to be driven by a complex transcriptional feedback circuitry. In the small genome of the green unicellular alga Ostreococcus tauri, two of the master clock genes Timing of Cab expression1 (TOC1) and Circadian Clock-Associated1 (CCA1) appear to be conserved, but others like Gigantea or Early-Flowering4 are lacking. Stably transformed luciferase reporter lines and tools for gene functional analysis were therefore developed to characterize clock gene function in this simple eukaryotic system. This approach revealed several features that are comparable to those in higher plants, including the circadian regulation of TOC1, CCA1, and the output gene Chlorophyll a/b Binding under constant light, the relative phases of TOC1/CCA1 expression under light/dark cycles, arrhythmic overexpression phenotypes under constant light, the binding of CCA1 to a conserved evening element in the TOC1 promoter, as well as the requirement of the evening element for circadian regulation of TOC1 promoter activity. Functional analysis supports TOC1 playing a central role in the clock, but repression of CCA1 had no effect on clock function in constant light, arguing against a simple TOC1 /CCA1 one-loop clock in Ostreococcus. The emergence of functional genomics in a simple green cell with a small genome may facilitate increased understanding of how complex cellular processes such as the circadian clock have evolved in plants.

Indexed as

Arabidopsis ProteinsChlorophytaCircadian RhythmCLOCK ProteinsEvolution, MolecularGene Expression Regulation, PlantGenome, PlantLightLight-Harvesting Protein ComplexesModels, BiologicalMolecular Sequence DataPhotic StimulationPhotosystem II Protein ComplexPhylogenyPromoter Regions, GeneticProtein BindingArabidopsis ProteinsCAB1 protein, ArabidopsisCCA1 protein, ArabidopsisCLOCK ProteinsLight-Harvesting Protein ComplexesPhotosystem II Protein ComplexTOC1 protein, ArabidopsisTranscription Factors

Identifiers

PMID19948792
PMCPMC2798331
OpenAlexW2166575652

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.