ArticleBMC plant biology2009
SolEST database: a "one-stop shop" approach to the study of Solanaceae transcriptomes.
Article in BMC plant biology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.
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Who cites it
9 citing papers in PubMed.
- Bioinformatics Resources for Plant Abiotic Stress Responses: State of the Art and Opportunities in the Fast Evolving -Omics Era.Plants (Basel, Switzerland) · 2020Review
- Bioinformatics resources for pollen.Plant reproduction · 2016Review
- Identification of key genes involved in root development of tomato using expressed sequence tag analysis.Physiology and molecular biology of plants : an international journal of functional plant biology · 2015Article
- Chromosomal organizations of major repeat families on potato (Solanum tuberosum) and further exploring in its sequenced genome.Molecular genetics and genomics : MGG · 2014Article
- Tomato genomic resources database: an integrated repository of useful tomato genomic information for basic and applied research.PloS one · 2014Article
- Solanum torvum responses to the root-knot nematode Meloidogyne incognita.BMC genomics · 2013Article
- Production of pharmaceutical proteins in solanaceae food crops.International journal of molecular sciences · 2013Article
- Advances in omics and bioinformatics tools for systems analyses of plant functions.Plant & cell physiology · 2011Review
- Clustered transcription factor genes regulate nicotine biosynthesis in tobacco.The Plant cell · 2010Article
Corrections and comments
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Authors and funding
4 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundSince no genome sequences of solanaceous plants have yet been completed, expressed sequence tag (EST) collections represent a reliable tool for broad sampling of Solanaceae transcriptomes, an attractive route for understanding Solanaceae genome functionality and a powerful reference for the structural annotation of emerging Solanaceae genome sequences. DESCRIPTION: We describe the SolEST database http://biosrv.cab.unina.it/solestdb which integrates different EST datasets from both cultivated and wild Solanaceae species and from two species of the genus Coffea. Background as well as processed data contained in the database, extensively linked to external related resources, represent an invaluable source of information for these plant families. Two novel features differentiate SolEST from other resources: i) the option of accessing and then visualizing Solanaceae EST/TC alignments along the emerging tomato and potato genome sequences; ii) the opportunity to compare different Solanaceae assemblies generated by diverse research groups in the attempt to address a common complaint in the SOL community.
conclusionDifferent databases have been established worldwide for collecting Solanaceae ESTs and are related in concept, content and utility to the one presented herein. However, the SolEST database has several distinguishing features that make it appealing for the research community and facilitates a "one-stop shop" for the study of Solanaceae transcriptomes.
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