ArticleMolecular biology reports2010
Generation and gene ontology based analysis of expressed sequence tags (EST) from a Panax ginseng C. A. Meyer roots.
Article in Molecular biology reports, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.
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26 citing papers in PubMed, 57 citations in OpenAlex.
- Identification of microRNA and analysis of target genes inChinese herbal medicines · 2023Article
- Till 2018: a survey of biomolecular sequences in genusJournal of ginseng research · 2020Review
- Metabolomic understanding of intrinsic physiology inJournal of ginseng research · 2019Article
- Comparative transcriptome analyses on terpenoids metabolism in field- and mountain-cultivated ginseng roots.BMC plant biology · 2019Article
- PgLOX6 encoding a lipoxygenase contributes to jasmonic acid biosynthesis and ginsenoside production in Panax ginseng.Journal of experimental botany · 2016Article
- Development of EST Intron-Targeting SNP Markers for Panax ginseng and Their Application to Cultivar Authentication.International journal of molecular sciences · 2016Article
- Comparative transcriptome analysis of different chemotypes elucidates withanolide biosynthesis pathway from medicinal plant Withania somnifera.Scientific reports · 2015Article
- The Spatial and Temporal Transcriptomic Landscapes of Ginseng, Panax ginseng C. A. Meyer.Scientific reports · 2015Article
- Functional analysis of β-amyrin synthase gene in ginsenoside biosynthesis by RNA interference.Plant cell reports · 2015Article
- Transcriptome analysis of methyl jasmonate-elicited Panax ginseng adventitious roots to discover putative ginsenoside biosynthesis and transport genes.International journal of molecular sciences · 2015Article
- Computer aided gene mining for gingerol biosynthesis.Bioinformation · 2015Article
- Genomic profile of the plants with pharmaceutical value.3 Biotech · 2014Review
- Transcriptome profiling and comparative analysis of Panax ginseng adventitious roots.Journal of ginseng research · 2014Article
- Both the mevalonate and the non-mevalonate pathways are involved in ginsenoside biosynthesis.Plant cell reports · 2014Article
- Discrimination of cultivation ages and cultivars of ginseng leaves using Fourier transform infrared spectroscopy combined with multivariate analysis.Journal of ginseng research · 2014Article
- Transcriptome analysis reveals ginsenosides biosynthetic genes, microRNAs and simple sequence repeats in Panax ginseng C. A. Meyer.BMC genomics · 2013Article
- Construction and analysis of EST libraries of the trans-polyisoprene producing plant, Eucommia ulmoides Oliver.Planta · 2012Article
- Interrelationship between calmodulin (CaM) and H2O2 in abscisic acid-induced antioxidant defense in the seedlings of Panax ginseng.Molecular biology reports · 2012Article
- Recent methodology in ginseng analysis.Journal of ginseng research · 2012Article
- Flavonoid biosynthesis genes putatively identified in the aromatic plant Polygonum minus via Expressed Sequences Tag (EST) analysis.International journal of molecular sciences · 2012Article
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Authors and funding
5 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Panax ginseng C. A. Meyer is a perennial herb from the Araliaceae family. Traditionally used as a medicinal plant in Oriental medicine for more than thousand years. Ginsenosides are the major therapeutic components in ginseng roots. Roots of the ginseng plant have more commercial value and based on the age. No genomic data available till now. In this study, transcriptome analysis for hairy root, 14 year root, 4 year root get insight in to ginsenoside pathway and genes responsible for long survival and stress. Totally 6,757 Expressed Sequence Tags (EST) was obtained from cDNA libraries. Clustering of those ESTs returned 1,037 contigs and 3,445 singlets for a total of 4,482 putative unigenes. Use of bioinformatics methods 85% of EST sequence was well annotated towards reeds one dimensional concept. The unique transcripts were functionally classified by using Gene Ontology (GO) hierarchy, Kyoto Encyclopedia of Genes and Genomes (KEGG), KEGG orthology and structural domain data from biological database. Isoprenoid and putative ginsenoside pathway genes were discussed. EST dataset provides a wide outlook of the genes expressed in hairy roots, 14 years root and 4 years root. The dataset contains more than 1,365 EST sequences related to plant secondary metabolism and 745 sequences related to stresses. This study will improve the genetic engineering of ginseng plant and ginsenosides rich plant development. One dimensional data will lead to the two and three dimensional data.
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