Evidence map›Paper›PMID 19940927›Full record

ArticleNature2009

Host plant genome overcomes the lack of a bacterial gene for symbiotic nitrogen fixation.

Tsuneo Hakoyama, Kaori Niimi, Hirokazu Watanabe, Ryohei Tabata, Junichi Matsubara, Shusei Sato, Yasukazu Nakamura, Satoshi Tabata, Li Jichun, Tsuyoshi Matsumoto and 9 more

Abstract read
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In one paragraph

Article in Nature, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed
9.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed, 114 citations in OpenAlex.

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  16. Comparative genome analysis ofMicrobial genomics · 2023
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  17. Article
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  19. How Rhizobia Adapt to the Nodule Environment.Journal of bacteriology · 2021
    Article
  20. Cells · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 7 institutions in 1 country.

Tsuneo HakoyamaNational Institute of Agrobiological Sciences, Tsukuba, Ibaraki 305-8602, Japan.
Kaori Niimi
Hirokazu Watanabe
Ryohei Tabata
Junichi Matsubara
Shusei Sato
Yasukazu Nakamura
Satoshi Tabata
Li Jichun
Tsuyoshi Matsumoto
Kazuyuki Tatsumi
Mika Nomura
Shigeyuki Tajima
Masumi Ishizaka
Koji Yano
Haruko Imaizumi-Anraku
Masayoshi Kawaguchi
Hiroshi Kouchi
Norio Suganuma
Aichi University of Education · JPInstitute of Agrobiological Sciences · JPKazusa DNA Research Institute · JPNagoya University · JPKagawa University · JPNational Institute for Agro-Environmental Sciences · JPNational Institute for Basic Biology · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Homocitrate is a component of the iron-molybdenum cofactor in nitrogenase, where nitrogen fixation occurs. NifV, which encodes homocitrate synthase (HCS), has been identified from various diazotrophs but is not present in most rhizobial species that perform efficient nitrogen fixation only in symbiotic association with legumes. Here we show that the FEN1 gene of a model legume, Lotus japonicus, overcomes the lack of NifV in rhizobia for symbiotic nitrogen fixation. A Fix(-) (non-fixing) plant mutant, fen1, forms morphologically normal but ineffective nodules. The causal gene, FEN1, was shown to encode HCS by its ability to complement a HCS-defective mutant of Saccharomyces cerevisiae. Homocitrate was present abundantly in wild-type nodules but was absent from ineffective fen1 nodules. Inoculation with Mesorhizobium loti carrying FEN1 or Azotobacter vinelandii NifV rescued the defect in nitrogen-fixing activity of the fen1 nodules. Exogenous supply of homocitrate also recovered the nitrogen-fixing activity of the fen1 nodules through de novo nitrogenase synthesis in the rhizobial bacteroids. These results indicate that homocitrate derived from the host plant cells is essential for the efficient and continuing synthesis of the nitrogenase system in endosymbionts, and thus provide a molecular basis for the complementary and indispensable partnership between legumes and rhizobia in symbiotic nitrogen fixation.

Indexed as

Genes, BacterialAzotobacter vinelandiiGene Expression Regulation, PlantGenes, PlantGenetic Complementation TestGenome, PlantKetoglutaric AcidsLotusMolecular Sequence DataMutationNitrogen FixationOxo-Acid-LyasesPlant ProteinsRhizobiumSaccharomyces cerevisiaeSymbiosishomocitrate synthasehomocitric acidKetoglutaric AcidsOxo-Acid-LyasesPlant ProteinsTricarboxylic Acids

Identifiers

PMID19940927
OpenAlexW2109575180

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.