Evidence map›Paper›PMID 19940160›Full record

ArticleThe Journal of biological chemistry2010

Activator Gcn4 employs multiple segments of Med15/Gal11, including the KIX domain, to recruit mediator to target genes in vivo.

Iness Jedidi, Fan Zhang, Hongfang Qiu, Stephen J Stahl, Ira Palmer, Joshua D Kaufman, Philippe S Nadaud, Sujoy Mukherjee, Paul T Wingfield, Christopher P Jaroniec and 1 more

Abstract read
In one paragraph

Article in The Journal of biological chemistry, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Mediator Subunit Med15 Regulates Cell Morphology and Mating inJournal of fungi (Basel, Switzerland) · 2023
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Possible Role for Allelic Variation in YeastFrontiers in microbiology · 2021
    Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Iness JedidiLaboratory of Gene Regulation and Development, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, Maryland 20892, USA.
Fan Zhang
Hongfang Qiu
Stephen J Stahl
Ira Palmer
Joshua D Kaufman
Philippe S Nadaud
Sujoy Mukherjee
Paul T Wingfield
Christopher P Jaroniec
Alan G Hinnebusch

Funding

Transcriptional Regulation of Gene ExpressionZIAHD008899 · NICHD · EUNICE KENNEDY SHRIVER NATIONAL INSTITUTE OF CHILD HEALTH & HUMAN DEVELOPMENT · PI HINNEBUSCH, ALAN G · 2010 to 2025
$11.6M
Intramural NIH HHS
6 · The paper itself

Abstract

Mediator is a multisubunit coactivator required for initiation by RNA polymerase II. The Mediator tail subdomain, containing Med15/Gal11, is a target of the activator Gcn4 in vivo, critical for recruitment of native Mediator or the Mediator tail subdomain present in sin4Delta cells. Although several Gal11 segments were previously shown to bind Gcn4 in vitro, the importance of these interactions for recruitment of Mediator and transcriptional activation by Gcn4 in cells was unknown. We show that interaction of Gcn4 with the Mediator tail in vitro and recruitment of this subcomplex and intact Mediator to the ARG1 promoter in vivo involve additive contributions from three different segments in the N terminus of Gal11. These include the KIX domain, which is a critical target of other activators, and a region that shares a conserved motif (B-box) with mammalian coactivator SRC-1, and we establish that B-box is a critical determinant of Mediator recruitment by Gcn4. We further demonstrate that Gcn4 binds to the Gal11 KIX domain directly and, by NMR chemical shift analysis combined with mutational studies, we identify the likely binding site for Gcn4 on the KIX surface. Gcn4 is distinctive in relying on comparable contributions from multiple segments of Gal11 for efficient recruitment of Mediator in vivo.

Indexed as

Basic-Leucine Zipper Transcription FactorsGene Expression Regulation, FungalMediator ComplexSaccharomyces cerevisiae ProteinsAmino Acid SequenceConserved SequenceNuclear Magnetic Resonance, BiomolecularPhenotypeProtein Interaction Domains and MotifsProtein Structure, TertiaryProtein SubunitsRNA Polymerase IISaccharomyces cerevisiaeTranscription, GeneticBasic-Leucine Zipper Transcription FactorsGAL11 protein, S cerevisiaeGCN4 protein, S cerevisiaeMediator ComplexProtein SubunitsRNA Polymerase IISaccharomyces cerevisiae Proteins

Identifiers

PMID19940160
PMCPMC2807301

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.