Evidence map›Paper›PMID 19939934›Full record

ArticleJournal of virology2010

Simian rotaviruses possess divergent gene constellations that originated from interspecies transmission and reassortment.

Jelle Matthijnssens, Zenobia F Taraporewala, Hongyan Yang, Shujing Rao, Lijuan Yuan, Dianjun Cao, Yasutaka Hoshino, Peter P C Mertens, Gerry R Carner, Monica McNeal and 3 more

Open access · greenAbstract readComparative Study
In one paragraph

Article in Journal of virology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
4.1field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 76 citations in OpenAlex.

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  11. Genetic characteristics and analysis of a novel rotavirus G3P[22] identified in diarrheic feces of Korean rabbit.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 8 institutions in 3 countries.

Jelle MatthijnssensLaboratory of Clinical and Epidemiological Virology, Department of Microbiology and Immunology, Rega Institute for Medical Research, University of Leuven, Leuven, Belgium.
Zenobia F Taraporewala
Hongyan Yang
Shujing Rao
Lijuan Yuan
Dianjun Cao
Yasutaka Hoshino
Peter P C Mertens
Gerry R Carner
Monica McNeal
Karol Sestak
Marc Van Ranst
John T Patton
National Institutes of Health · USClemson University · USRega Institute for Medical Research · BECincinnati Children's Hospital Medical Center · USNational Institute of Allergy and Infectious Diseases · USThe Pirbright Institute · GBTulane University · USVirginia Tech · US

Funding

Modification Of The Antigenicity & Virulence Of Rotaviruses By Reverse GeneticsZIAAI000788 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI PATTON, JOHN · 2009 to 2015
$4.2M
ENTERIC VIRAL INFECTIONS OF CAPTIVE RHESUS MACAQUESR21RR024871 · NCRR · TULANE UNIVERSITY OF LOUISIANA · PI SESTAK, KAROL · 2008 to 2009
$379k
Genetic Studies Of Rotavirus Pathogenesis And Development Of Rotavirus VaccinesZIAAI000340 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI HOSHINO, YASUTAKA · 2009 to 2010
$342k
Intramural NIH HHSNCRR NIH HHS R21 RR024871NCRR NIH HHS R21RR024871
6 · The paper itself

Abstract

Although few simian rotaviruses (RVs) have been isolated, such strains have been important for basic research and vaccine development. To explore the origins of simian RVs, the complete genome sequences of strains PTRV (G8P[1]), RRV (G3P[3]), and TUCH (G3P[24]) were determined. These data allowed the genotype constellations of each virus to be determined and the phylogenetic relationships of the simian strains with each other and with nonsimian RVs to be elucidated. The results indicate that PTRV was likely transmitted from a bovine or other ruminant into pig-tailed macaques (its host of origin), since its genes have genotypes and encode outer-capsid proteins similar to those of bovine RVs. In contrast, most of the genes of rhesus-macaque strains, RRV and TUCH, have genotypes more typical of canine-feline RVs. However, the sequences of the canine and/or feline (canine/feline)-like genes of RRV and TUCH are only distantly related to those of modern canine/feline RVs, indicating that any potential transmission of a progenitor of these viruses from a canine/feline host to a simian host was not recent. The remaining genes of RRV and TUCH appear to have originated through reassortment with bovine, human, or other RV strains. Finally, comparison of PTRV, RRV, and TUCH genes with those of the vervet-monkey RV SA11-H96 (G3P[2]) indicates that SA11-H96 shares little genetic similarity to other simian strains and likely has evolved independently. Collectively, our data indicate that simian RVs are of diverse ancestry with genome constellations that originated largely by interspecies transmission and reassortment with nonhuman animal RVs.

Indexed as

Amino Acid SequenceAnimalsAntigens, ViralCatsCattleDogsGenome, ViralHaplorhiniHumansModels, MolecularMolecular Sequence DataOpen Reading FramesPhylogenyProtein Structure, TertiaryReassortant VirusesRotavirusAntigens, ViralViral Structural Proteins

Identifiers

PMID19939934
PMCPMC2812371
OpenAlexW2081277567

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.