Evidence map›Paper›PMID 19937262›Full record

SynthesisFunctional & integrative genomics2010

Meta-analysis of transcripts associated with race-specific resistance to stripe rust in wheat demonstrates common induction of blue copper-binding protein, heat-stress transcription factor, pathogen-induced WIR1A protein, and ent-kaurene synthase transcripts.

Tristan E Coram, Xueling Huang, Gangming Zhan, Matthew L Settles, Xianming Chen

Abstract readMeta-Analysis
PubMed Publisher
In one paragraph

Synthesis in Functional & integrative genomics, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed.

  1. Article
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  6. Article
  7. The Fungal EndophyteJournal of fungi (Basel, Switzerland) · 2022
    Article
  8. Review
  9. Bioinspired Rhamnolipid Protects Wheat AgainstFrontiers in plant science · 2022
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
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  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Tristan E CoramUSDA-ARS, Plant Science Research Unit, Raleigh, NC, 27695-7620, USA. tristan.coram@ars.usda.gov
Xueling Huang
Gangming Zhan
Matthew L Settles
Xianming Chen

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Resistance to stripe rust in wheat is a preferred method of disease prevention. Race-specific all-stage resistance usually provides complete protection; thus an understanding of the molecular control of race-specific resistance is important. To build on previous studies of race-specific resistance controlled by the Yr5 gene, this study reports the construction and use of a custom oligonucleotide microarray to perform a meta-analysis of the transcriptional response involved in race-specific resistance conferred by Yr1, Yr5, Yr7, Yr8, Yr9, Yr10, Yr15, and Yr17. By profiling the response of eight resistance genes in a common background, we identified 28 transcripts significantly involved in the resistance phenotype across all genotypes. The most significant of these were annotated as blue copper-binding protein, heat-stress transcription factor, pathogen-induced WIR1A protein, and ent-kaurene synthase transcripts. Unique transcripts significant in each genotype were also identified, which highlighted some transcriptional events specific to certain genotypes. The approach was effective in narrowing down the list of candidate genes in comparison to studying individual genotypes. Annotation revealed key gene expression events involved in race-specific resistance. The results confirm the activity of known R-gene-mediated pathway race-specific resistance, including an oxidative burst that likely contributes to a hypersensitive response, as well as pathogenesis-related protein expression and activity of the phenylpropanoid pathway. However, several identified transcripts remained unknown and may prove interesting candidates for further characterization.

Indexed as

Gene Expression Regulation, PlantAlkyl and Aryl TransferasesBasidiomycotaCarrier ProteinsDNA-Binding ProteinsGene Expression ProfilingGenotypeHeat-Shock ProteinsHeat Shock Transcription FactorsImmunity, InnatePhenotypePlant DiseasesPlant ProteinsRNA, MessengerSpecies SpecificityTranscription FactorsAlkyl and Aryl TransferasesCarrier Proteinscopper-binding proteinDNA-Binding Proteinsent-kaurene synthetase BHeat-Shock ProteinsHeat Shock Transcription FactorsPlant ProteinsRNA, MessengerTranscription Factors

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.