Evidence map›Paper›PMID 19935829›Full record

ArticleEuropean journal of human genetics : EJHG2010

The (CAG)n tract of Machado-Joseph Disease gene (ATXN3): a comparison between DNA and mRNA in patients and controls.

Conceição Bettencourt, Cristina Santos, Rafael Montiel, Teresa Kay, João Vasconcelos, Patrícia Maciel, Manuela Lima

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in European journal of human genetics : EJHG, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
0.7field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 24 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 6 institutions in 3 countries.

Conceição BettencourtCenter of Research in Natural Resources and Department of Biology, University of the Azores, Ponta Delgada, Portugal. mcbettencourt@uac.pt
Cristina Santos
Rafael Montiel
Teresa Kay
João Vasconcelos
Patrícia Maciel
Manuela Lima
Universidade dos Açores · PTCenter for Research and Advanced Studies of the National Polytechnic Institute · MXHospital de Dona Estefânia · PTHospital do Divino Espírito Santo · PTUniversitat Autònoma de Barcelona · ESUniversity of Minho · PT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Machado-Joseph disease (MJD) is an autosomal dominant neurodegenerative disorder of late onset (occurring at a mean age of 40.2 years). The clinical manifestation of MJD is dependent on the presence of an expansion of the (CAG)(n) motif within exon 10 of the ATXN3 gene, located at 14q32.1. The variance in onset of MJD is only partially correlated (approximately 50-80%) with the extension of the CAG tract in genomic DNA (gDNA). The main aim of this work was to determine whether there are discrepancies in the size of the (CAG)(n) tract between gDNA and mRNA, and to establish whether there is a better association between age at onset and repeat size at the mRNA level. We typed gDNA and cDNA samples for the (CAG)(n) tract totalizing 108 wild-type and 52 expanded ATXN3 alleles. In wild-type alleles no differences were found between gDNA and cDNA. In expanded alleles, the CAG repeat size in gDNA was not always directly transcribed into the mRNA; on average there were differences of +1 repeat at the cDNA level. The slight discrepancies obtained were insufficient to cause significant differences in the distribution of the expanded alleles, and therefore no improvement in onset variance explanation was obtained with mRNA.

Indexed as

AdultAllelesAtaxin-3Case-Control StudiesDNAGene Expression RegulationHumansMachado-Joseph DiseaseNerve Tissue ProteinsNuclear ProteinsRepressor ProteinsRNA, MessengerTrinucleotide Repeat ExpansionAtaxin-3ATXN3 protein, humanDNANerve Tissue ProteinsNuclear ProteinsRepressor ProteinsRNA, Messenger

Identifiers

PMID19935829
PMCPMC2987309
OpenAlexW2102312711

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.