ArticleNucleic acids research2010
H-InvDB in 2009: extended database and data mining resources for human genes and transcripts.
Article in Nucleic acids research, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.
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Who cites it
21 citing papers in PubMed.
- Complex Prediction in Large PPI Networks Using Expansion and Stripe of Core Cliques.Interdisciplinary sciences, computational life sciences · 2023Article
- Splicing Modulators Are Involved in Human Polyglutamine Diversification via Protein Complexes Shuttling between Nucleus and Cytoplasm.International journal of molecular sciences · 2023Article
- Protein Bioinformatics Databases and Resources.Methods in molecular biology (Clifton, N.J.) · 2017Review
- Long non-coding RNAs in Colorectal Cancer: Progression and Future Directions.Journal of Cancer · 2017Article
- Transcriptional profiling analysis and functional prediction of long noncoding RNAs in cancer.Oncotarget · 2016Article
- Transcriptome sequencing reveals potential mechanism of cryptic 3' splice site selection in SF3B1-mutated cancers.PLoS computational biology · 2015Article
- Deep transcriptome profiling of mammalian stem cells supports a regulatory role for retrotransposons in pluripotency maintenance.Nature genetics · 2014Article
- STaRRRT: a table of short tandem repeats in regulatory regions of the human genome.BMC genomics · 2013Article
- Canonical correlation analysis for RNA-seq co-expression networks.Nucleic acids research · 2013Article
- Article
- H-InvDB in 2013: an omics study platform for human functional gene and transcript discovery.Nucleic acids research · 2013Article
- Finding protein-coding genes through human polymorphisms.PloS one · 2013Article
- SNPnexus: a web server for functional annotation of novel and publicly known genetic variants (2012 update).Nucleic acids research · 2012Article
- Long Non-Coding RNAs in Infection Biology.Frontiers in genetics · 2012Article
- NONCODE v3.0: integrative annotation of long noncoding RNAs.Nucleic acids research · 2012Article
- PCDq: human protein complex database with quality index which summarizes different levels of evidences of protein complexes predicted from h-invitational protein-protein interactions integrative dataset.BMC systems biology · 2012Article
- The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications.Journal of biomedical semantics · 2011Article
- Anthocyanidins-enriched bilberry extracts inhibit 3T3-L1 adipocyte differentiation via the insulin pathway.Nutrition & metabolism · 2011Article
- Databases and resources for human small non-coding RNAs.Human genomics · 2011Review
- CIPRO 2.5: Ciona intestinalis protein database, a unique integrated repository of large-scale omics data, bioinformatic analyses and curated annotation, with user rating and reviewing functionality.Nucleic acids research · 2011Article
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Authors and funding
12 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
We report the extended database and data mining resources newly released in the H-Invitational Database (H-InvDB; http://www.h-invitational.jp/). H-InvDB is a comprehensive annotation resource of human genes and transcripts, and consists of two main views and six sub-databases. The latest release of H-InvDB (release 6.2) provides the annotation for 219,765 human transcripts in 43,159 human gene clusters based on human full-length cDNAs and mRNAs. H-InvDB now provides several new annotation features, such as mapping of microarray probes, new gene models, relation to known ncRNAs and information from the Glycogene database. H-InvDB also provides useful data mining resources-'Navigation search', 'H-InvDB Enrichment Analysis Tool (HEAT)' and web service APIs. 'Navigation search' is an extended search system that enables complicated searches by combining 16 different search options. HEAT is a data mining tool for automatically identifying features specific to a given human gene set. HEAT searches for H-InvDB annotations that are significantly enriched in a user-defined gene set, as compared with the entire H-InvDB representative transcripts. H-InvDB now has web service APIs of SOAP and REST to allow the use of H-InvDB data in programs, providing the users extended data accessibility.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.