Evidence map›Paper›PMID 19932076›Full record

ArticleAnalytical biochemistry2010

Metal and substrate binding to an Fe(II) dioxygenase resolved by UV spectroscopy with global regression analysis.

Piotr K Grzyska, Robert P Hausinger, Denis A Proshlyakov

Abstract read
In one paragraph

Article in Analytical biochemistry, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Article
  3. The oxidation of cyclo-olefin by the S = 2 ground-state complex [FeJournal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2020
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Spectroscopic analyses of 2-oxoglutarate-dependent oxygenases: TauD as a case study.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2017
    Review
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Piotr K GrzyskaDepartment of Biochemistry & Molecular Biology, Michigan State University, East Lansing, MI 48824, USA.
Robert P Hausinger
Denis A Proshlyakov

Funding

Study of alpha-ketoglutarate-dependent dioxygenasesR01GM063584 · NIGMS · MICHIGAN STATE UNIVERSITY · PI HAUSINGER, ROBERT P · 2002 to 2014
$3.8M
Protein radicals in O2 reduction by Cytochrome OxidaseR01GM070544 · NIGMS · MICHIGAN STATE UNIVERSITY · PI PROSHLYAKOV, DENIS A · 2004 to 2008
$1.1M
NIGMS NIH HHS GM063586NIGMS NIH HHS GM070544NIGMS NIH HHS R01 GM063584NIGMS NIH HHS R01 GM070544
6 · The paper itself

Abstract

The addition of divalent metal ions or substrate taurine to TauD, an alpha-ketoglutarate-dependent dioxygenase, alters its UV absorption, as clearly observed by monitoring the protein's difference spectra. Binding of metal ions leads to a decrease in absorption at approximately 297 nm and modulation of other features. A separate signature with enhanced absorption at approximately 295 nm is identified for binding of taurine. These narrow ( approximately 700 cm(-1)) and intense ( approximately 0.5mM(-1) cm(-1)) spectral changes are attributed to ligand-induced protein conformational changes affecting the environment of aromatic residues. The changes in the UV difference spectra were exploited to assess directly the thermodynamics and kinetics of ligand interactions in wild-type TauD and selected variants. This approach holds promise as a new tool to probe ligand-induced conformational changes in a wide range of other proteins. Experimental and quantification approaches for a reliable analysis of protein absorption below 320 nm are presented.

Indexed as

Amino Acid SubstitutionKetoglutaric AcidsKineticsLigandsMetalsMixed Function OxygenasesMutagenesis, Site-DirectedProtein BindingProtein Structure, TertiaryRecombinant ProteinsRegression AnalysisSpectrophotometry, UltravioletSubstrate SpecificityTaurineThermodynamicsKetoglutaric AcidsLigandsMetalsMixed Function OxygenasesRecombinant ProteinsTaurinetaurine-alpha-ketoglutarate dioxygenase

Identifiers

PMID19932076
PMCPMC2823959

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.