Evidence map›Paper›PMID 19929881›Full record

ArticleThe Plant journal : for cell and molecular biology2010

A mitochondrial rRNA dimethyladenosine methyltransferase in Arabidopsis.

Uwe Richter, Kristina Kühn, Sachiko Okada, Axel Brennicke, Andreas Weihe, Thomas Börner

Open access · bronzeAbstract read
In one paragraph

Article in The Plant journal : for cell and molecular biology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
0.7field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
  2. CNature communications · 2024
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  7. Deciphering the epitranscriptome: A green perspective.Journal of integrative plant biology · 2016
    Review
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  9. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Uwe RichterInstitut für Biologie/Genetik, Humboldt-Universität, Chausseestr. 117, 10115 Berlin, Germany.
Kristina Kühn
Sachiko Okada
Axel Brennicke
Andreas Weihe
Thomas Börner
Humboldt-Universität zu Berlin · DEUniversität Ulm · DEAustralian Research Council · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

S-adenosyl-L-methionine-dependent rRNA dimethylases mediate the methylation of two conserved adenosines near the 3' end of the rRNA in the small ribosomal subunits of bacteria, archaea and eukaryotes. Proteins related to this family of dimethylases play an essential role as transcription factors (mtTFBs) in fungal and animal mitochondria. Human mitochondrial rRNA is methylated and human mitochondria contain two related mtTFBs, one proposed to act as rRNA dimethylase, the other as transcription factor. The nuclear genome of Arabidopsis thaliana encodes three dimethylase/mtTFB-like proteins, one of which, Dim1B, is shown here to be imported into mitochondria. Transcription initiation by mitochondrial RNA polymerases appears not to be stimulated by Dim1B in vitro. In line with this finding, phylogenetic analyses revealed Dim1B to be more closely related to a group of eukaryotic non-mitochondrial rRNA dimethylases (Dim1s) than to fungal and animal mtTFBs. We found that Dim1B was capable of substituting the E. coli rRNA dimethylase activity of KsgA. Moreover, we observed methylation of the conserved adenines in the 18S rRNA of Arabidopsis mitochondria; this modification was not detectable in a mutant lacking Dim1B. These data provide evidence: (i) for rRNA methylation in Arabidopsis mitochondria; and (ii) that Dim1B is the enzyme catalyzing this process.

Indexed as

ArabidopsisArabidopsis ProteinsGenetic Complementation TestMethyltransferasesMitochondriaMutagenesis, InsertionalMutationPhylogenyRNA, PlantRNA, Ribosomal, 18SSequence AlignmentSequence Analysis, DNATranscription FactorsTranscription, Genetic16S rRNA (adenine(1518)-N(6)-adenine(1519)-N(6))-dimethyltransferaseArabidopsis ProteinsMethyltransferasesRNA, PlantRNA, Ribosomal, 18STranscription Factors

Identifiers

PMID19929881
PMCPMC2860759
OpenAlexW1973384058

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.