Evidence map›Paper›PMID 19929835›Full record

ReviewCurrent topics in medicinal chemistry2009

Fragment-based cocktail crystallography by the medical structural genomics of pathogenic protozoa consortium.

Christophe L M J Verlinde, Erkang Fan, Sayaka Shibata, Zongsheng Zhang, Zhihua Sun, Wei Deng, Jennifer Ross, Jessica Kim, Liren Xiao, Tracy L Arakaki and 12 more

Abstract readReview
In one paragraph

Review in Current topics in medicinal chemistry, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Article
  2. Combining MicroED and native mass spectrometry for structural discovery of enzyme-small molecule complexes.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Fragment screening and HIV therapeutics.Topics in current chemistry · 2012
    Review
  15. Screening a fragment cocktail library using ultrafiltration.Analytical and bioanalytical chemistry · 2011
    Article
  16. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors.

Christophe L M J VerlindeMedical Structural Genomics of Pathogenic Protozoa, University of Washington, Seattle, WA 98195, USA. verlinde@u.washington.edu
Erkang Fan
Sayaka Shibata
Zongsheng Zhang
Zhihua Sun
Wei Deng
Jennifer Ross
Jessica Kim
Liren Xiao
Tracy L Arakaki
Jürgen Bosch
Jonathan M Caruthers
Eric T Larson
Isolde Letrong
Alberto Napuli
Angela Kelly
Natasha Mueller
Frank Zucker
Wesley C Van Voorhis
Frederick S Buckner
Ethan A Merritt
Wim G J Hol

Funding

Structural Genomics of Pathogenic ProtozoaP50GM064655 · NIGMS · UNIVERSITY OF WASHINGTON · PI HOL, WILHELMUS G. J. · 2001 to 2004
$25.3M
Target Selection and Ligand DiscoveryP01AI067921 · NIAID · UNIVERSITY OF WASHINGTON · PI HOL, WILHELMUS G. J. · 2006 to 2008
$6.7M
NIAID NIH HHS P01 AI067921NIAID NIH HHS P01AI067921NIGMS NIH HHS P50 GM064655NIGMS NIH HHS P50GM64655
6 · The paper itself

Abstract

The history of fragment-based drug discovery, with an emphasis on crystallographic methods, is sketched, illuminating various contributions, including our own, which preceded the industrial development of the method. Subsequently, the creation of the BMSC fragment cocktails library is described. The BMSC collection currently comprises 68 cocktails of 10 compounds that are shape-wise diverse. The utility of these cocktails for initiating lead discovery in structure-based drug design has been explored by soaking numerous protein crystals obtained by our MSGPP (Medical Structural Genomics of Pathogenic Protozoa) consortium. Details of the fragment selection and cocktail design procedures, as well as examples of the successes obtained are given. The BMSC Fragment Cocktail recipes are available free of charge and are in use in over 20 academic labs.

Indexed as

Crystallography, X-RayDrug DesignDrug DiscoveryGenome, ProtozoanHumansProtozoan InfectionsSmall Molecule LibrariesSmall Molecule Libraries

Identifiers

PMID19929835
PMCPMC2897734

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.