Evidence map›Paper›PMID 19926613›Full record

ArticleIntegrative cancer therapies2009

Nr1d1, an important circadian pathway regulatory gene, is suppressed by cigarette smoke in murine lungs.

Vihas T Vasu, Carroll E Cross, Kishorchandra Gohil

Open access · goldAbstract read
In one paragraph

Article in Integrative cancer therapies, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
0.3field-weighted citation impact, top 48% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 54 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Review
  11. Article
  12. Circadian regulation of pulmonary disease: the importance of timing.Clinical science (London, England : 1979) · 2023
    Review
  13. Review
  14. Article
  15. Article
  16. It's about time: clocks in the developing lung.The Journal of clinical investigation · 2020
    Review
  17. Article
  18. Article
  19. Article
  20. Period 3, a tumor suppressor in non-small cell lung cancer, is silenced by hypermethylation.International journal of clinical and experimental pathology · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Vihas T VasuDepartment of Internal Medicine, Centre for Comparative Respiratory Biology and Medicine, University of California, Davis, CA 95616, USA. vtvasu@ucdavis.edu
Carroll E Cross
Kishorchandra Gohil
University of California, Davis · US

Funding

Vitamin E metabolism and lung toxicologyR01ES011985 · NIEHS · UNIVERSITY OF CALIFORNIA DAVIS · PI CROSS, CARROLL E · 2004 to 2006
$942k
NIEHS NIH HHS ES011895NIEHS NIH HHS R01 ES011985
6 · The paper itself

Abstract

Nuclear receptor subfamily 1, group D member 1 (Nr1d1), also known as Rev-erb-alpha, belongs to the family of "orphan receptors" and functions as a member of clock gene family. In addition to being an important member of clock circuitry, Nr1d1, also regulates cell proliferation, lipid metabolism, and inflammation and is also touted as a tumor suppressor. Our focus on Nr1d1 was stimulated by data from a genome-wide search for mRNA correlates of cigarette smoke (CS) sensitive--whole smoke (WS) and filtered smoke (FS)--lung transcriptomes in tumor-resistant C57BL6 and tumor-susceptible AJ mice strains. Differential analysis of approximately 15,000 genes using Affymetrix 430A 2.0 high-density oligonucleotide arrays identified modulation of genes related to circadian pathways by CS in lungs of both mouse strains. Nr1d1 expression was downregulated by both WS and FS irrespective of mouse strain as compared to respective air-breathing controls. WS was more effective than FS on decreasing Nr1d1 expression. The present data suggest that transcriptional regulation of Nr1d1 by CS may affect circadian rhythmicity and thus may play a complementary role in CS-induced lung respiratory tract pathobiology and/or lung tumorigenesis.

Indexed as

Administration, InhalationAnimalsCircadian RhythmGene Expression ProfilingGene Expression RegulationGenetic Predisposition to DiseaseLungMaleMiceMice, Inbred C57BLNuclear Receptor Subfamily 1, Group D, Member 1Oligonucleotide Array Sequence AnalysisSmokingSpecies SpecificityNr1d1 protein, mouseNuclear Receptor Subfamily 1, Group D, Member 1

Identifiers

PMID19926613
PMCPMC2837720
OpenAlexW2004170725

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.