Evidence map›Paper›PMID 19925028›Full record

ArticleTechnology in cancer research & treatment2009

Three assays show differences in binding of wild-type and mutant p53 to unique gene sequences.

Uma Chandrachud, Susannah Gal

Open access · greenAbstract read
In one paragraph

Article in Technology in cancer research & treatment, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.9field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Uma ChandrachudDepartment of Biological Sciences, Binghamton University, Binghamton, NY 13902, USA. sgal@binghamton.edu
Susannah Gal
Binghamton University · US

Funding

Diagnostic Assays of p53 DNA Binding ActivityR15CA101783 · NCI · STATE UNIVERSITY NEW YORK BINGHAMTON · PI GAL, SUSANNAH · 2004 to 2004
$226k
NCI NIH HHS 1R15 CA101783-01A1NCI NIH HHS R15 CA101783
6 · The paper itself

Abstract

Cancer-associated mutations in the p53 gene often change amino acids in the protein's DNA binding domain. We used three different binding assays specifically gel shift, DNA binding scintillation proximity assay and a streptavidin magnetic bead assay to analyze the DNA binding of the tumor suppressor p53 from 4 human cell lines with different DNA sequences from the mdm2, p21 and cyclin G genes and a mutant form of the cyclin G sequence. Treatment of MCF-7 cells having wild-type p53 with hydrogen peroxide increased the binding of p53 to DNA as detected using all three assays, but to different extents. The p53 proteins from the thyroid cancer cell lines with different p53 mutations (ARO, WRO and NPA) have comparable binding reactions in the three assays, but show different specificities for the sequences. Here we show that multiple different binding assays allow us to generate a more complete picture of the function of DNA transcription factors in diseases such as cancer.

Indexed as

Genes, p53MutationCell Line, TumorCell NucleusDNAGene Expression Regulation, NeoplasticHumansNuclear ProteinsProtein BindingSequence Analysis, DNAStreptavidinTranscription, GeneticTumor Suppressor Protein p53DNANuclear ProteinsStreptavidinTP53 protein, humanTumor Suppressor Protein p53

Identifiers

PMID19925028
PMCPMC2917581
OpenAlexW2115761606

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.