Evidence map›Paper›PMID 19923735›Full record

ArticleActa crystallographica. Section F, Structural biology and crystallization communications2009

Engineering an improved crystal contact across a solvent-mediated interface of human fibroblast growth factor 1.

Akshaya K Meher, Sachiko I Blaber, Jihun Lee, Ejiro Honjo, Ryota Kuroki, Michael Blaber

Abstract read
In one paragraph

Article in Acta crystallographica. Section F, Structural biology and crystallization communications, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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0citing papers in PubMed
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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Akshaya K MeherDepartment of Biomedical Sciences, Florida State University, Tallahassee, 32306-4300, USA.
Sachiko I Blaber
Jihun Lee
Ejiro Honjo
Ryota Kuroki
Michael Blaber

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Large-volume protein crystals are a prerequisite for neutron diffraction studies and their production represents a bottleneck in obtaining neutron structures. Many protein crystals that permit the collection of high-resolution X-ray diffraction data are inappropriate for neutron diffraction owing to a plate-type morphology that limits the crystal volume. Human fibroblast growth factor 1 crystallizes in a plate morphology that yields atomic resolution X-ray diffraction data but has insufficient volume for neutron diffraction. The thin physical dimension has been identified as corresponding to the b cell edge and the X-ray structure identified a solvent-mediated crystal contact adjacent to position Glu81 that was hypothesized to limit efficient crystal growth in this dimension. In this report, a series of mutations at this crystal contact designed to both reduce side-chain entropy and replace the solvent-mediated interface with direct side-chain contacts are reported. The results suggest that improved crystal growth is achieved upon the introduction of direct crystal contacts, while little improvement is observed with side-chain entropy-reducing mutations alone.

Indexed as

CrystallizationCrystallography, X-RayFibroblast Growth Factor 1HumansModels, MolecularMolecular Sequence DataMutagenesisNeutron DiffractionProtein ConformationProtein EngineeringSolventsX-Ray DiffractionFibroblast Growth Factor 1Solvents

Identifiers

PMID19923735
PMCPMC2777043

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.