Evidence map›Paper›PMID 19923254›Full record

ArticleGenome research2010

An integrative genomic analysis identifies Bhmt2 as a diet-dependent genetic factor protecting against acetaminophen-induced liver toxicity.

Hong-Hsing Liu, Peng Lu, Yingying Guo, Erin Farrell, Xun Zhang, Ming Zheng, Betty Bosano, Zhaomei Zhang, John Allard, Guochun Liao and 16 more

Open access · bronzeAbstract read
In one paragraph

Article in Genome research, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 46 citations in OpenAlex.

  1. Review
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  3. Article
  4. Article
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  7. Review
  8. Betaine-homocysteineFASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2019
    Article
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  10. Article
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  15. Candidate gene polymorphisms in patients with acetaminophen-induced acute liver failure.Drug metabolism and disposition: the biological fate of chemicals · 2014
    Article
  16. Article
  17. Article
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

26 authors at 6 institutions in 2 countries.

Hong-Hsing LiuDepartment of Genetics and Genomics, Roche Palo Alto, Palo Alto, California 94304, USA. honghsing.liu@gmail.com
Peng Lu
Yingying Guo
Erin Farrell
Xun Zhang
Ming Zheng
Betty Bosano
Zhaomei Zhang
John Allard
Guochun Liao
Siyu Fu
Jinzhi Chen
Kimberly Dolim
Ayako Kuroda
Jonathan Usuka
Janet Cheng
William Tao
Kevin Welch
Yanzhou Liu
Joseph Pease
Steve A de Keczer
Mohammad Masjedizadeh
Jing-Shan Hu
Paul Weller
Tim Garrow
Gary Peltz
Roche (Bosnia-Herzegovina) · BARoche (United States) · USNational Institutes of Health · USPalo Alto University · USStanford University · USUniversity of Illinois Urbana-Champaign · US

Funding

Nutrient Regulation of BHMT ExpressionR01DK052501 · NIDDK · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI GARROW, TIMOTHY A · 2003 to 2006
$1.3M
Pharmacogenetic Analysis in MiceR01GM068885 · NIGMS · ROCHE PALO ALTO, LLC · PI PELTZ, GARY A · 2004 to 2006
$860k
NIDDK NIH HHS 1 R01 DK52501NIDDK NIH HHS R01 DK052501NIGMS NIH HHS 1 R01 GM068885-01A1NIGMS NIH HHS R01 GM068885
6 · The paper itself

Abstract

Acetaminophen-induced liver toxicity is the most frequent precipitating cause of acute liver failure and liver transplant, but contemporary medical practice has mainly focused on patient management after a liver injury has been induced. An integrative genetic, transcriptional, and two-dimensional NMR-based metabolomic analysis performed using multiple inbred mouse strains, along with knowledge-based filtering of these data, identified betaine-homocysteine methyltransferase 2 (Bhmt2) as a diet-dependent genetic factor that affected susceptibility to acetaminophen-induced liver toxicity in mice. Through an effect on methionine and glutathione biosynthesis, Bhmt2 could utilize its substrate (S-methylmethionine [SMM]) to confer protection against acetaminophen-induced injury in vivo. Since SMM is only synthesized in plants, Bhmt2 exerts its beneficial effect in a diet-dependent manner. Identification of Bhmt2 and the affected biosynthetic pathway demonstrates how a novel method of integrative genomic analysis in mice can provide a unique and clinically applicable approach to a major public health problem.

Indexed as

AcetaminophenAnalgesics, Non-NarcoticAnimalsBetaine-Homocysteine S-MethyltransferaseChemical and Drug Induced Liver InjuryDietGene Expression ProfilingLiverLiver Failure, AcuteMagnetic Resonance SpectroscopyMiceMice, Inbred StrainsMolecular Sequence DataOligonucleotide Array Sequence AnalysisSequence Analysis, DNAVitamin UAcetaminophenAnalgesics, Non-NarcoticBetaine-Homocysteine S-MethyltransferaseVitamin U

Identifiers

PMID19923254
PMCPMC2798828
OpenAlexW2101062898

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.