Evidence map›Paper›PMID 19919539›Full record

ArticleEnvironmental microbiology2010

Complex regulatory network encompassing the Csr, c-di-GMP and motility systems of Salmonella Typhimurium.

Kristina Jonas, Adrianne N Edwards, Irfan Ahmad, Tony Romeo, Ute Römling, Ojar Melefors

Open access · greenAbstract read
In one paragraph

Article in Environmental microbiology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 67 papers.

0numbers the graph read from it
0cells of the map it votes in
67citing papers in PubMed
4.6field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

67 citing papers in PubMed, 100 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. CsrA-Mediated Translational Activation of theJournal of bacteriology · 2023
    Article
  5. Article
  6. Article
  7. Article
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  9. Article
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  12. Review
  13. Article
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  15. Article
  16. Article
  17. mSphere · 2018
    Article
  18. Article
  19. Review
  20. Article

7 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Kristina JonasDepartment of Microbiology, Tumor and Cell Biology, Karolinska Institutet, SE-17177 Stockholm, Sweden. kjonas@mit.edu
Adrianne N Edwards
Irfan Ahmad
Tony Romeo
Ute Römling
Ojar Melefors
Karolinska Institutet · SEEmory University · US

Funding

Mechanism of CsrA-mediated global regulationR01GM059969 · NIGMS · UNIVERSITY OF NORTH TEXAS HLTH SCI CTR · PI BABITZKE, PAUL L, ROMEO, TONY · 1999 to 2021
$7.6M
Biofilm Formation and Dispersal MechanismsR01GM066794 · NIGMS · UNIVERSITY OF FLORIDA · PI ROMEO, TONY · 2003 to 2011
$2.5M
NIGMS NIH HHS GM059969NIGMS NIH HHS GM066794NIGMS NIH HHS R01 GM059969NIGMS NIH HHS R01 GM066794
6 · The paper itself

Abstract

Bacterial survival depends on the ability to switch between sessile and motile lifestyles in response to changing environmental conditions. In many species, this switch is governed by (3'-5')-cyclic-diguanosine monophosphate (c-di-GMP), a signalling molecule, which is metabolized by proteins containing GGDEF and/or EAL domains. Salmonella Typhimurium contains 20 such proteins. Here, we show that the RNA-binding protein CsrA regulates the expression of eight genes encoding GGDEF, GGDEF-EAL and EAL domain proteins. CsrA bound directly to the mRNA leaders of five of these genes, suggesting that it may regulate these genes post-transcriptionally. The c-di-GMP-specific phosphodiesterase STM3611, which reciprocally controls flagella function and production of biofilm matrix components, was regulated by CsrA binding to the mRNA, but was also indirectly regulated by CsrA through the FlhDC/FliA flagella cascade and STM1344. STM1344 is an unconventional (c-di-GMP-inactive) EAL domain protein, recently identified as a negative regulator of flagella gene expression. Here, we demonstrate that CsrA directly downregulates expression of STM1344, which in turn regulates STM3611 through fliA and thus reciprocally controls motility and biofilm factors. Altogether, our data reveal that the concerted and complex regulation of several genes encoding GGDEF/EAL domain proteins allows CsrA to control the motility-sessility switch in S. Typhimurium at multiple levels.

Indexed as

Gene Expression Regulation, BacterialBacterial ProteinsBase SequenceBiofilmsCyclic GMPFlagellaMolecular Sequence DataPhosphoric Diester HydrolasesRNA-Binding ProteinsSalmonella typhimuriumBacterial Proteinsbis(3',5')-cyclic diguanylic acidCyclic GMPPhosphoric Diester HydrolasesRNA-Binding Proteins

Identifiers

PMID19919539
PMCPMC2888478
OpenAlexW2035922299

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.