Evidence map›Paper›PMID 19919093›Full record

ArticleBiochemistry2009

Bruno protein contains an expanded RNA recognition motif.

Angeline M Lyon, Brad S Reveal, Paul M Macdonald, David W Hoffman

Open access · greenAbstract read
In one paragraph

Article in Biochemistry, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.5field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Translational control in oocyte development.Cold Spring Harbor perspectives in biology · 2011
    Review
  6. CELFish ways to modulate mRNA decay.Biochimica et biophysica acta
    Review
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 3 countries.

Angeline M LyonDepartment of Chemistry and Biochemistry, University of Texas, Austin, Texas 78712, USA.
Brad S Reveal
Paul M Macdonald
David W Hoffman
Institut de Biologie Moléculaire et Cellulaire · FRInstitute of Molecular and Cell Biology · RUThe University of Texas at Austin · US

Funding

REGULATED MRNA TRANSLATION IN DROSOPHILA BODY PATTERNINGR01GM054409 · NIGMS · UNIVERSITY OF TEXAS AUSTIN · PI MACDONALD, PAUL M. · 1995 to 2010
$2.1M
NIGMS NIH HHS GM54409NIGMS NIH HHS R01 GM054409
6 · The paper itself

Abstract

The RNA recognition motif (or RRM) is a ubiquitous RNA-binding module present in approximately 2% of the proteins encoded in the human genome. This work characterizes an expanded RRM, which is present in the Drosophila Bruno protein, and targets regulatory elements in the oskar mRNA through which Bruno controls translation. In this Bruno RRM, the deletion of 40 amino acids prior to the N-terminus of the canonical RRM resulted in a significantly decreased affinity of the protein for its RNA target. NMR spectroscopy showed that the expanded Bruno RRM contains the familiar RRM fold of four antiparallel beta-strands and two alpha-helices, preceded by a 10-residue loop that contacts helix alpha(1) and strand beta(2); additional amino acids at the N-terminus of the domain are relatively flexible in solution. NMR results also showed that a truncated form of the Bruno RRM, lacking the flexible N-terminal amino acids, forms a stable and complete canonical RRM, so that the loss of RNA binding activity cannot be attributed to disruption of the RRM fold. This expanded Bruno RRM provides a new example of the features that are important for RNA recognition by an RRM-containing protein.

Indexed as

Amino Acid SequenceAnimalsDogsDrosophilaDrosophila ProteinsHumansMolecular Sequence DataProtein BindingProtein FoldingProtein Structure, SecondaryRNARNA-Binding ProteinsSequence AlignmentZebrafishbru1 protein, DrosophilaDrosophila Proteinsosk protein, DrosophilaRNARNA-Binding Proteins

Identifiers

PMID19919093
PMCPMC4301712
OpenAlexW2056520801

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.