Evidence map›Paper›PMID 19917615›Full record

ArticleThe Journal of biological chemistry2010

The beta subunit of voltage-gated Ca2+ channels interacts with and regulates the activity of a novel isoform of Pax6.

Yun Zhang, Yoichi Yamada, Mingming Fan, Saroja D Bangaru, Bochao Lin, Jian Yang

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed, 1 pooled it
1.6field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 1 synthesis or guideline pooled it, 45 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Review
  4. Brain communications · 2026
    Article
  5. Modulating ion channels with nanobodies.Synthetic and systems biotechnology · 2025
    Review
  6. Article
  7. Article
  8. Pathophysiological Roles of Auxiliary Calcium Channel αHandbook of experimental pharmacology · 2023
    Article
  9. Review
  10. Article
  11. Review
  12. Review
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Regulation of high-voltage-activated CaWiley interdisciplinary reviews. Membrane transport and signaling · 2013
    Article
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Yun ZhangDepartment of Biological Sciences, Columbia University, New York, New York 10027, USA.
Yoichi Yamada
Mingming Fan
Saroja D Bangaru
Bochao Lin
Jian Yang
Columbia University · US

Funding

Structural basis of Ca2+ channel function and regulationR01NS053494 · NINDS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI YANG, JIAN · 2007 to 2015
$3.2M
Neuromodulation of Voltage-gated Ca2+ ChannelsR01NS045819 · NINDS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI YANG, JIAN · 2004 to 2007
$1.4M
NINDS NIH HHS NS045819NINDS NIH HHS NS053494NINDS NIH HHS R01 NS045819NINDS NIH HHS R01 NS053494
6 · The paper itself

Abstract

Ca(2+) channel beta subunits (Ca(v)betas) are essential for regulating the surface expression and gating of high voltage-activated Ca(2+) channels through their interaction with Ca(2+) channel alpha(1) subunits. In efforts to uncover new interacting partners and new functions for Ca(v)beta, we identified a new splicing isoform of Pax6, a transcription factor crucial for the development of the eye, nose, brain, and pancreas. Pax6 contains two DNA binding domains (paired domain and homeodomain), a glycine-rich linker connecting these two domains and a C-terminal proline-, serine-, and threonine-rich transactivation domain. The protein sequence and function of Pax6 are highly conserved from invertebrate to human. The newly isolated isoform, named Pax6(S), retains the paired domain, linker, and homeodomain of Pax6, but its C terminus is composed of a truncated classic proline, serine, and threonine domain and a unique S tail. Pax6(S) shows a similar level of transcriptional activity in vitro as does Pax6, but only in primates is the protein sequence highly conserved. Its spatial-temporal expression profiles are also different from those of Pax6. These divergences suggest a noncanonical role of Pax6(S) during development. The interaction between Pax6(S) and Ca(v)beta is mainly endowed by the S tail. Co-expression of Pax6(S) with a Ca(2+) channel complex containing the beta(3) subunit in Xenopus oocytes does not affect channel properties. Conversely, however, beta(3) is able to suppress the transcriptional activity of Pax6(S). Furthermore, in the presence of Pax6(S), beta(3) is translocated from the cytoplasm to the nucleus. These results suggest that full-length Ca(v)beta may act directly as a transcription regulator independent of its role in regulating Ca(2+) channel activity.

Indexed as

Amino Acid SequenceAnimalsBase SequenceBiophysicsCalcium ChannelsCell NucleusCHO CellsCricetinaeCricetulusCytoplasmEye ProteinsHomeodomain ProteinsHumansKidneyMolecular Sequence DataOocytesCACNB3 protein, humanCalcium ChannelsEye ProteinsHomeodomain ProteinsPaired Box Transcription FactorsPAX6 protein, humanPAX6 Transcription FactorProtein SubunitsRepressor Proteins

Identifiers

PMID19917615
PMCPMC2807309
OpenAlexW1993184143

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.