Evidence map›Paper›PMID 19915542›Full record

ArticleNature chemical biology2009

Natural amino acids do not require their native tRNAs for efficient selection by the ribosome.

Philip R Effraim, Jiangning Wang, Michael T Englander, Josh Avins, Thomas S Leyh, Ruben L Gonzalez, Virginia W Cornish

Abstract read
In one paragraph

Article in Nature chemical biology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed.

  1. Article
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  8. Function and origin of mistranslation in distinct cellular contexts.Critical reviews in biochemistry and molecular biology · 2017
    Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Review
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  17. Cellular mechanisms that control mistranslation.Nature reviews. Microbiology · 2010
    Review
  18. Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Philip R EffraimColumbia University, New York, New York, USA.
Jiangning Wang
Michael T Englander
Josh Avins
Thomas S Leyh
Ruben L Gonzalez
Virginia W Cornish

Funding

MEDICAL SCIENTIST TRAINING PROGRAMT32GM007367 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI REINER, STEVEN L · 1985 to 2021
$25.1M
SULFATE ADENYLATION-BIOCHEMISTRY &ENZYMOLOGYR01GM054469 · NIGMS · YESHIVA UNIVERSITY · PI LEYH, THOMAS S. · 1995 to 2011
$4.7M
The Structural Dynamics of Translation InitiationR01GM084288 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI GONZALEZ, RUBEN L · 2009 to 2022
$4.4M
Mechanistic Basis for Amino Acid Discrimination by the Translational MachineryR01GM090126 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI CORNISH, VIRGINIA W · 2010 to 2013
$1.5M
NIGMS NIH HHS R01 GM054469NIGMS NIH HHS R01 GM084288NIGMS NIH HHS R01 GM090126NIGMS NIH HHS R01 GM54469NIGMS NIH HHS T32 GM007367NIGMS NIH HHS T32 GM07367
6 · The paper itself

Abstract

The involvement of tRNA structural elements beyond the anticodon in aminoacyl-tRNA (aa-tRNA) selection by the ribosome has revealed that substrate recognition is considerably more complex than originally envisioned in the adaptor hypothesis. By combining recent breakthroughs in aa-tRNA synthesis and mechanistic and structural studies of protein synthesis, we have investigated whether aa-tRNA recognition further extends to the amino acid, which would explain various translation disorders exhibited by misacylated tRNAs. Contrary to expectation, we find that natural amino acids misacylated onto natural but non-native tRNAs are selected with efficiencies very similar to those of their correctly acylated counterparts. Despite this, small but reproducible differences in selection indeed demonstrate that the translational machinery is sensitive to the amino acid-tRNA pairing. These results suggest either that the ribosome is an exquisite sensor of natural versus unnatural amino acid-tRNA pairings and/or that aa-tRNA selection is not the primary step governing the amino acid specificity of the ribosome.

Indexed as

Protein BiosynthesisAmino AcidsAnticodonEscherichia coliFluorescence Resonance Energy TransferModels, MolecularRibosomesRNA, TransferRNA, Transfer, Amino AcylSubstrate SpecificityTransfer RNA AminoacylationAmino AcidsAnticodonRNA, TransferRNA, Transfer, Amino Acyl

Identifiers

PMID19915542
PMCPMC2911967

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.