Evidence map›Paper›PMID 19915021›Full record

ArticleJournal of bacteriology2010

Genome-wide characterization of the SloR metalloregulome in Streptococcus mutans.

Kevin P O'Rourke, Jeremy D Shaw, Mitchell W Pesesky, Brian T Cook, Susanne M Roberts, Jeffrey P Bond, Grace A Spatafora

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
1.3field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 33 citations in OpenAlex.

  1. Review
  2. Small regulatory RNAs are mediators of theJournal of bacteriology · 2023
    Article
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  4. Review
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  11. Modification of theMicrobial genomics · 2017
    Article
  12. Article
  13. Article
  14. Stress Physiology of Lactic Acid Bacteria.Microbiology and molecular biology reviews : MMBR · 2016
    Review
  15. Article
  16. Article
  17. Article
  18. Review
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Kevin P O'RourkeDepartment of Biology, Middlebury College, 276 Bicentennial Way, MBH354, Middlebury, VT 05753. spatafor@middlebury.edu.
Jeremy D Shaw
Mitchell W Pesesky
Brian T Cook
Susanne M Roberts
Jeffrey P Bond
Grace A Spatafora
Middlebury College · USUniversity of Vermont · US

Funding

VOLATILE SIGNALING IN PHARBITIS NILP20RR016462 · NCRR · UNIVERSITY OF VERMONT &ST AGRIC COLLEGE · PI KIRSHENBAUM, ARI PHILLIP · 2001 to 2011
$31.1M
Investigating SloR virulence gene metalloregulation in Streptococcus mutansR01DE014711 · NIDCR · MIDDLEBURY COLLEGE · PI SPATAFORA, GRACE A. · 2004 to 2021
$4.1M
Investigating SloR virulence gene metalloregulation in S. mutans.R56DE014711 · NIDCR · MIDDLEBURY COLLEGE · PI SPATAFORA, GRACE A. · 2009 to 2009
$341k
NCRR NIH HHS P20 RR016462NIDCR NIH HHS R01 DE014711NIDCR NIH HHS R56 DE014711
6 · The paper itself

Abstract

Streptococcus mutans is the primary causative agent of human dental caries, a ubiquitous infectious disease for which effective treatment strategies remain elusive. We investigated a 25-kDa SloR metalloregulatory protein in this oral pathogen, along with its target genes that contribute to cariogenesis. Previous studies have demonstrated manganese- and SloR-dependent repression of the sloABCR metal ion transport operon in S. mutans. In the present study, we demonstrate that S. mutans coordinates this repression with that of certain virulence attributes. Specifically, we noted virulence gene repression in a manganese-containing medium when SloR binds to promoter-proximal sequence palindromes on the S. mutans chromosome. We applied a genome-wide approach to elucidate the sequences to which SloR binds and to reveal additional "class I" genes that are subject to SloR- and manganese-dependent repression. These analyses identified 204 S. mutans genes that are preceded by one or more conserved palindromic SloR recognition elements (SREs). We cross-referenced these genes with those that we had identified previously as SloR and/or manganese modulated in microarray and real-time quantitative reverse transcription-PCR (qRT-PCR) experiments. From this analysis, we identified a number of S. mutans virulence genes that are subject to transcriptional upregulation by SloR and noted that such "class II"-type regulation is dependent on direct SloR binding to promoter-distal SREs. These observations are consistent with a bifunctional role for the SloR metalloregulator and implicate it as a target for the development of therapies aimed at alleviating S. mutans-induced caries formation.

Indexed as

Gene Expression Regulation, BacterialRegulonBinding SitesConserved SequenceDNA, BacterialGene Expression ProfilingHumansInverted Repeat SequencesManganeseOligonucleotide Array Sequence AnalysisPromoter Regions, GeneticProtein BindingRepressor ProteinsReverse Transcriptase Polymerase Chain ReactionStreptococcus mutansVirulence FactorsDNA, BacterialManganeseRepressor ProteinsVirulence Factors

Identifiers

PMID19915021
PMCPMC2820837
OpenAlexW2172157545

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.