ReviewFEBS letters2009
Fungal regulatory evolution: cis and trans in the balance.
Review in FEBS letters, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
15 citing papers in PubMed.
- The Origin and Early Evolution of Fungi: Challenges, Inferences, and Principles.Annual review of cell and developmental biology · 2026Review
- Polyphasic Characterization of the Biocontrol Potential of a Novel Strain ofJournal of fungi (Basel, Switzerland) · 2024Article
- Data integration for inferring context-specific gene regulatory networks.Current opinion in systems biology · 2020Article
- Integrative Omics Analysis Reveals a Limited Transcriptional Shock After Yeast Interspecies Hybridization.Frontiers in genetics · 2020Article
- Evolution of reduced co-activator dependence led to target expansion of a starvation response pathway.eLife · 2017Article
- Reconstruction and Analysis of the Evolution of Modular Transcriptional Regulatory Programs Using Arboretum.Methods in molecular biology (Clifton, N.J.) · 2016Article
- Divergence and selectivity of expression-coupled histone modifications in budding yeasts.PloS one · 2014Article
- Population genomics and transcriptional consequences of regulatory motif variation in globally diverse Saccharomyces cerevisiae strains.Molecular biology and evolution · 2013Article
- Article
- Arboretum: reconstruction and analysis of the evolutionary history of condition-specific transcriptional modules.Genome research · 2013Article
- Extensive divergence of yeast stress responses through transitions between induced and constitutive activation.Proceedings of the National Academy of Sciences of the United States of America · 2011Article
- Inferring regulatory mechanisms from patterns of evolutionary divergence.Molecular systems biology · 2011Article
- Gene expression in fungi.IMA fungus · 2011Article
- Evidence of association between nucleosome occupancy and the evolution of transcription factor binding sites in yeast.BMC evolutionary biology · 2011Article
- The role of nucleosome positioning in the evolution of gene regulation.PLoS biology · 2010Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
2 authors.
Funding
Abstract
Regulatory divergence is likely a major driving force in evolution. Comparative genomics is being increasingly used to infer the evolution of gene regulation. Ascomycota fungi are uniquely suited among eukaryotes for regulatory evolution studies, due to broad phylogenetic scope, many sequenced genomes, and tractability of genomic analysis. Here we review recent advances in the identification of the contribution of cis- and trans-factors to expression divergence. Whereas current strategies have led to the discovery of surprising signatures and mechanisms, we still understand very little about the adaptive role of regulatory evolution. Empirical studies including experimental evolution, comparative functional genomics and hybrid and engineered strains are showing early promise toward deciphering the contribution of regulatory divergence to adaptation.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.