Evidence map›Paper›PMID 19914084›Full record

ArticleJournal of photochemistry and photobiology. B, Biology2010

The effects of formins on the conformation of subdomain 1 in actin filaments.

Zoltán Ujfalusi, Szilvia Barkó, Gábor Hild, Miklós Nyitrai

Abstract read
In one paragraph

Article in Journal of photochemistry and photobiology. B, Biology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Zoltán UjfalusiUniversity of Pécs, Faculty of Medicine, Department of Biophysics, Pécs, Szigeti str. 12, H-7624, Hungary.
Szilvia Barkó
Gábor Hild
Miklós Nyitrai

Funding

Wellcome Trust 079003
6 · The paper itself

Abstract

In this study we investigated the effects of formins on the conformation of actin filaments by using the method of fluorescence quenching. Actin was labelled with IAEDANS at Cys(374) and the quencher was acrylamide. The results showed that formin binding induced structural changes in the subdomain 1 of actin protomers which were reflected by greater quenching constants (K(SV)). Simultaneously the fraction of the fluorophore population accessible for the quencher (alpha) decreased. These observations suggest that the conformational distribution characteristic for the actin protomers became broader after the binding of formins, for which the structural framework was provided by a more flexible protein matrix in the microenvironment of the label. The effects of formins depended on the formin:actin molar ratio, and also on the ionic strength of the medium. These observations are in agreement with previous results and underline the importance of the intramolecular conformational changes induced by formins in the structure of actin filaments.

Indexed as

AcrylamideActin CytoskeletonActinsAnimalsCarrier ProteinsFluorescent DyesForminsNaphthalenesulfonatesProtein BindingProtein Structure, TertiaryRabbitsSpectrometry, FluorescenceStaining and Labeling1,5-I-AEDANSAcrylamideActinsCarrier ProteinsDiap1 protein, mouseFluorescent DyesForminsNaphthalenesulfonates

Identifiers

PMID19914084
PMCPMC2865993

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.