Evidence map›Paper›PMID 19913027›Full record

ArticleJournal of molecular biology2010

Probing interactions between CLIP-170, EB1, and microtubules.

Kamlesh K Gupta, Michelle V Joyce, Aranda R Slabbekoorn, Zhiqing C Zhu, Benjamin A Paulson, Bill Boggess, Holly V Goodson

Open access · greenAbstract read
In one paragraph

Article in Journal of molecular biology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.1field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
  2. Article
  3. Phase separation of +TIP networks regulates microtubule dynamics.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  4. Article
  5. Article
  6. Article
  7. Microtubule-based force generation.Wiley interdisciplinary reviews. Nanomedicine and nanobiotechnology · 2017
    Review
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. PSD-95 alters microtubule dynamics via an association with EB3.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2011
    Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Kamlesh K GuptaDepartment of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, IN 46556, USA.
Michelle V Joyce
Aranda R Slabbekoorn
Zhiqing C Zhu
Benjamin A Paulson
Bill Boggess
Holly V Goodson
University of Notre Dame · US

Funding

Interactions between CLIP-170 and tubulinR01GM065420 · NIGMS · UNIVERSITY OF NOTRE DAME · PI GOODSON, HOLLY V · 2003 to 2007
$1.6M
NIGMS NIH HHS R01 GM065420
6 · The paper itself

Abstract

Cytoplasmic linker protein 170 (CLIP-170) is a microtubule (MT) plus-end tracking protein (+TIP) that dynamically localizes to the MT plus end and regulates MT dynamics. The mechanisms of these activities remain unclear because the CLIP-170-MT interaction is poorly understood, and even less is known about how CLIP-170 and other +TIPs act together as a network. CLIP-170 binds to the acidic C-terminal tail of alpha-tubulin. However, the observation that CLIP-170 has two CAP-Gly (cytoskeleton-associated protein glycine-rich) motifs and multiple serine-rich regions suggests that a single CLIP-170 molecule has multiple tubulin binding sites, and that these sites might bind to multiple parts of the tubulin dimer. Using a combination of chemical cross-linking and mass spectrometry, we find that CLIP-170 binds to both alpha-tubulin and beta-tubulin, and that binding is not limited to the acidic C-terminal tails. We provide evidence that these additional binding sites include the H12 helices of both alpha-tubulin and beta-tubulin and are significant for CLIP-170 activity. Previous work has shown that CLIP-170 binds to end-binding protein 1 (EB1) via the EB1 C-terminus, which mimics the acidic C-terminal tail of tubulin. We find that CLIP-170 can utilize its multiple tubulin binding sites to bind to EB1 and MT simultaneously. These observations help to explain how CLIP-170 can nucleate MTs and alter MT dynamics, and they contribute to understanding the significance and properties of the +TIP network.

Indexed as

Amino Acid SequenceAnimalsBinding SitesCross-Linking ReagentsIn Vitro TechniquesMicrotubule-Associated ProteinsMicrotubulesMolecular Sequence DataNeoplasm ProteinsPeptide FragmentsProtein BindingProtein Interaction Domains and MotifsRecombinant ProteinsSpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationSubtilisinSwineCross-Linking Reagentscytoplasmic linker protein 170EB1 microtubule binding proteinsMicrotubule-Associated ProteinsNeoplasm ProteinsPeptide FragmentsRecombinant ProteinsSubtilisinTubulin

Identifiers

PMID19913027
PMCPMC2990918
OpenAlexW1992775480

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.