Evidence map›Paper›PMID 19912643›Full record

ArticleBMC genetics2009

Hypermethylation of the DLC1 CpG island does not alter gene expression in canine lymphoma.

Jeffrey N Bryan, Mohamed Jabbes, Linda M Berent, Gerald L Arthur, Kristen H Taylor, Kerry C Rissetto, Carolyn J Henry, Farah Rahmatpanah, Wendi V Rankin, Jose A Villamil and 2 more

Open access · diamondAbstract read
In one paragraph

Article in BMC genetics, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
0.4field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Genome-wide DNA methylation analysis in canine gastrointestinal lymphoma.The Journal of veterinary medical science · 2020
    Article
  7. Article
  8. Epigenetic Mechanisms in Canine Cancer.Frontiers in oncology · 2020
    Review
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 1 country.

Jeffrey N BryanDept of Veterinary Medicine and Surgery, University of Missouri-Columbia, 65211, USA. bryanjn@vetmed.wsu.edu
Mohamed Jabbes
Linda M Berent
Gerald L Arthur
Kristen H Taylor
Kerry C Rissetto
Carolyn J Henry
Farah Rahmatpanah
Wendi V Rankin
Jose A Villamil
Michael R Lewis
Charles W Caldwell
University of Missouri · USWashington State University · USHarry S. Truman Memorial Veterans' Hospital · USMissouri College · US

Funding

MU Biomedical Informatics Research Training ProgramT15LM007089 · NLM · UNIVERSITY OF MISSOURI-COLUMBIA · PI SIMOES, EDUARDO J · 1992 to 2011
$6.9M
Epigenetic Signature of Non-Hodgkin's LymphomasR33CA097880 · NCI · UNIVERSITY OF MISSOURI-COLUMBIA · PI CALDWELL, CHARLES W · 2004 to 2007
$1.4M
DNA Methylation in Non-Hodgkin's LymphomasR01CA100055 · NCI · UNIVERSITY OF MISSOURI-COLUMBIA · PI CALDWELL, CHARLES W · 2003 to 2006
$1.0M
Epigenetic Signature of Non-Hodgkin's LymphomasR21CA097880 · NCI · UNIVERSITY OF MISSOURI-COLUMBIA · PI CALDWELL, CHARLES W · 2003 to 2003
$143k
NCI NIH HHS CA097880NCI NIH HHS CA100055NLM NIH HHS T15-LM07089
6 · The paper itself

Abstract

backgroundThis study is a comparative epigenetic evaluation of the methylation status of the DLC1 tumor suppressor gene in naturally-occurring canine lymphoma. Canine non-Hodgkin's lymphoma (NHL) has been proposed to be a relevant preclinical model that occurs spontaneously and may share causative factors with human NHL due to a shared home environment. The canine DLC1 mRNA sequence was derived from normal tissue. Using lymphoid samples from 21 dogs with NHL and 7 normal dogs, the methylation status of the promoter CpG island of the gene was defined for each sample using combined bisulfite restriction analysis (COBRA), methylation-specific PCR (MSP), and bisulfite sequencing methods. Relative gene expression was determined using real-time PCR.

resultsThe mRNA sequence of canine DLC1 is highly similar to the human orthologue and contains all protein functional groups, with 97% or greater similarity in functional regions. Hypermethylation of the 5' and 3' flanking regions of the promoter was statistically significantly associated with the NHL phenotype, but was not associated with silencing of expression or differences in survival.

conclusionThe canine DLC1 is constructed highly similarly to the human gene, which has been shown to be an important tumor suppressor in many forms of cancer. As in human NHL, the promoter CpG island of DLC1 in canine NHL samples is abnormally hypermethylated, relative to normal lymphoid tissue. This study confirms that hypermethylation occurs in canine cancers, further supporting the use of companion dogs as comparative models of disease for evaluation of carcinogenesis, biomarker diagnosis, and therapy.

Indexed as

CpG IslandsDNA MethylationGene Expression Regulation, NeoplasticAmino Acid SequenceAnimalsConserved SequenceDog DiseasesDogsFemaleHumansLymphoma, Non-HodgkinMaleMolecular Sequence DataPromoter Regions, GeneticSequence AlignmentTumor Suppressor ProteinsTumor Suppressor Proteins

Identifiers

PMID19912643
PMCPMC2784477
OpenAlexW2034293000

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.