Evidence map›Paper›PMID 19912542›Full record

ArticleMolecular microbiology2009

Co-evolution of multipartite interactions between an extended tmRNA tag and a robust Lon protease in Mycoplasma.

Zhiyun Ge, A Wali Karzai

Open access · bronzeAbstract read
In one paragraph

Article in Molecular microbiology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
0.5field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 27 citations in OpenAlex.

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  13. Degradation of SsrA-tagged proteins in streptococci.Microbiology (Reading, England) · 2015
    Article
  14. Review
  15. Tunable protein degradation in bacteria.Nature biotechnology · 2014
    Article
  16. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 2 countries.

Zhiyun GeDepartment of Biochemistry and Cell Biology, Stony Brook University, Stony Brook, NY 11794, USA.
A Wali Karzai
Stony Brook University · US

Funding

Virulence Mechanism of Y. pestis and tularensisP01AI055621 · NIAID · STATE UNIVERSITY NEW YORK STONY BROOK · PI BENACH, JORGE L. · 2004 to 2010
$20.7M
Quality Control of Protein TranslationR01GM065319 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI KARZAI, A. WALI · 2002 to 2012
$2.5M
Quality Control of Protein TranslationR56GM065319 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI KARZAI, A. WALI · 2008 to 2008
$262k
NIAID NIH HHS AI055621NIAID NIH HHS P01 AI055621NIGMS NIH HHS GM65319NIGMS NIH HHS R01 GM065319NIGMS NIH HHS R56 GM065319
6 · The paper itself

Abstract

Messenger RNAs that lack in-frame stop codons promote ribosome stalling and accumulation of aberrant and potentially harmful polypeptides. The SmpB-tmRNA quality control system has evolved to solve problems associated with non-stop mRNAs, by rescuing stalled ribosomes and directing the addition of a peptide tag to the C-termini of the associated proteins, marking them for proteolysis. In Escherichia coli, the ClpXP system is the major contributor to disposal of tmRNA-tagged proteins. We have shown that the AAA+ Lon protease can also degrade tmRNA-tagged proteins, but with much lower efficiency. Here, we present a unique case of enhanced recognition and degradation of an extended Mycoplasma pneumoniae (MP) tmRNA tag by the MP-Lon protease. We demonstrate that MP-Lon can efficiently and selectively degrade MP-tmRNA-tagged proteins. Most significantly, our studies reveal that the larger (27 amino acids long) MP-tmRNA tag contains multiple discrete signalling motifs for efficient recognition and rapid degradation by Lon. We propose that higher-affinity multipartite interactions between MP-Lon and the extended MP-tmRNA tag have co-evolved from pre-existing weaker interactions, as exhibited by Lon in E. coli, to better fulfil the function of MP-Lon as the sole soluble cytoplasmic protease responsible for the degradation of tmRNA-tagged proteins.

Indexed as

Evolution, MolecularAmino Acid MotifsAmino Acid SequenceEndopeptidasesEscherichia coliExoribonucleasesGene Expression Regulation, BacterialMolecular Sequence DataMycoplasmaNucleic Acid ConformationProtease LaProtein FoldingRibosomesRNA, BacterialRNA, MessengerEndopeptidasesExoribonucleasesProtease LaRNA, BacterialRNA, MessengertmRNA

Identifiers

PMID19912542
PMCPMC2806816
OpenAlexW1976196986

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.