Evidence map›Paper›PMID 19912235›Full record

ArticleBrain pathology (Zurich, Switzerland)2010

Gene expression analysis of tuberous sclerosis complex cortical tubers reveals increased expression of adhesion and inflammatory factors.

Karin Boer, Peter B Crino, Jan A Gorter, Mark Nellist, Floor E Jansen, Wim G M Spliet, Peter C van Rijen, Floyd R A Wittink, Timo M Breit, Dirk Troost and 2 more

Open access · greenAbstract read
In one paragraph

Article in Brain pathology (Zurich, Switzerland), 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 86 papers.

0numbers the graph read from it
0cells of the map it votes in
86citing papers in PubMed
3.7field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

86 citing papers in PubMed, 151 citations in OpenAlex.

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26 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 1 institution in 1 country.

Karin BoerDepartment of (Neuro)Pathology, Academic Medical Center, Amsterdam, The Netherlands.
Peter B Crino
Jan A Gorter
Mark Nellist
Floor E Jansen
Wim G M Spliet
Peter C van Rijen
Floyd R A Wittink
Timo M Breit
Dirk Troost
Wytse J Wadman
Eleonora Aronica
Academic Medical Center · NL

Funding

Structural consequences of TSC gene mutations in brainR01NS045021 · NINDS · UNIVERSITY OF PENNSYLVANIA · PI CRINO, PETER B · 2003 to 2012
$2.8M
NINDS NIH HHS NS045021NINDS NIH HHS R01 NS045021
6 · The paper itself

Abstract

Cortical tubers in patients with tuberous sclerosis complex are associated with disabling neurological manifestations, including intractable epilepsy. While these malformations are believed to result from the effects of TSC1 or TSC2 gene mutations, the molecular mechanisms leading to tuber formation, as well as the onset of seizures, remain largely unknown. We used the Affymetrix Gene Chip platform to provide the first genome-wide investigation of gene expression in surgically resected tubers, compared with histological normal perituberal tissue from the same patients or autopsy control tissue. We identified 2501 differentially expressed genes in cortical tubers compared with autopsy controls. Expression of genes associated with cell adhesion, for example, VCAM1, integrins and CD44, or with the inflammatory response, including complement factors, serpinA3, CCL2 and several cytokines, was increased in cortical tubers, whereas genes related to synaptic transmission, for example, the glial glutamate transporter GLT-1, and voltage-gated channel activity, exhibited lower expression. Gene expression in perituberal cortex was distinct from autopsy control cortex suggesting that even in the absence of tissue pathology the transcriptome is altered in TSC. Changes in gene expression yield insights into new candidate genes that may contribute to tuber formation or seizure onset, representing new targets for potential therapeutic development.

Indexed as

AdolescentAdultAgedBiomarkersCell AdhesionCerebral CortexChildChild, PreschoolFemaleGene ExpressionGenome-Wide Association StudyHumansImmunohistochemistryInfantInflammationMaleBiomarkers

Identifiers

PMID19912235
PMCPMC2888867
OpenAlexW2159452633

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.