Evidence map›Paper›PMID 19910028›Full record

SynthesisThe Journal of allergy and clinical immunology2010

A genome-wide association study on African-ancestry populations for asthma.

Rasika A Mathias, Audrey V Grant, Nicholas Rafaels, Tracey Hand, Li Gao, Candelaria Vergara, Yuhjung J Tsai, Mao Yang, Monica Campbell, Cassandra Foster and 39 more

Open access · bronzeAbstract readMeta-AnalysisMulticenter Study
In one paragraph

Synthesis in The Journal of allergy and clinical immunology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 104 papers, 8 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
104citing papers in PubMed, 8 pooled it
14.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

104 citing papers in PubMed, 8 syntheses or guidelines pooled it, 194 citations in OpenAlex.

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44 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

49 authors at 11 institutions in 4 countries.

Rasika A MathiasInherited Disease Research Branch, National Human Genome Research Institute, National Institutes of Health, Baltimore, MD, USA.
Audrey V Grant
Nicholas Rafaels
Tracey Hand
Li Gao
Candelaria Vergara
Yuhjung J Tsai
Mao Yang
Monica Campbell
Cassandra Foster
Peisong Gao
A Togias
Nadia N Hansel
Gregory Diette
N Franklin Adkinson
Mark C Liu
Mezbah Faruque
Georgia M Dunston
Harold R Watson
Michael B Bracken
Josephine Hoh
Pissamai Maul
Trevor Maul
Anne E Jedlicka
Tanda Murray
Jacqueline B Hetmanski
Roxann Ashworth
Chrissie M Ongaco
Kurt N Hetrick
Kimberly F Doheny
Elizabeth W Pugh
Charles N Rotimi
Jean Ford
Celeste Eng
Esteban G Burchard
Patrick M A Sleiman
Hakon Hakonarson
Erick Forno
Benjamin A Raby
Scott T Weiss
Alan F Scott
Michael Kabesch
Liming Liang
Gonçalo Abecasis
Miriam F Moffatt
William O C Cookson
Ingo Ruczinski
Terri H Beaty
Kathleen C Barnes
Johns Hopkins University · USBrigham and Women's Hospital · USUniversity of the West Indies · BBChildren's Hospital of Philadelphia · USHoward University · USImperial College London · GBNational Institutes of Health · USUniversity of California, San Francisco · USUniversity of Michigan · USYale University · USLudwig-Maximilians-Universität München · DE

Funding

Understanding Asthma EndotypesU19AI077439 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Nirav Rati Bhakta · 2008 to 2026
$41.1M
STRUCTURAL/FUNCTIONAL CHARACTERIZATION OF AMINOGLYCOSIDEG12RR003048 · NCRR · HOWARD UNIVERSITY · PI SOUTHERLAND, WILLIAM M. · 1985 to 2011
$19.0M
Trial of Behavioral Changes in Home Exposure ControlP01ES009606 · NIEHS · JOHNS HOPKINS UNIVERSITY · PI EGGLESTON, PEYTON A · 1999 to 2008
$6.8M
Genome-Wide Association Studies of Asthma in Populations of African DescentR01HL087699 · NHLBI · JOHNS HOPKINS UNIVERSITY · PI BARNES, KATHLEEN C · 2006 to 2008
$5.8M
Gene-environments and Admixture in Latino Asthmatics (GALA 2)R01ES015794 · NIEHS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BURCHARD, ESTEBAN GONZALEZ · 2008 to 2012
$5.4M
Whole Genome Analyses for Asthma in Latino PopulationsR01HL088133 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BURCHARD, ESTEBAN GONZALEZ · 2008 to 2012
$3.8M
Perinatal Risk of Asthma in Infants of Asthmatic MothersR01AI041040 · NIAID · YALE UNIVERSITY · PI BRACKEN, MICHAEL B · 1996 to 2007
$3.8M
Howard/Hopkins Center for Reducing Asthma DisparitiesU01HL072433 · NHLBI · HOWARD UNIVERSITY · PI DUNSTON, GEORGIA M · 2002 to 2006
$3.0M
Genetic Studies of Immune Responsiveness to CockroachR01AI050024 · NIAID · JOHNS HOPKINS UNIVERSITY · PI BARNES, KATHLEEN C · 2003 to 2007
$2.0M
AIRWAY DISEASE AND COCKROACH EXPOSURE IN PUBLIC HOUSINGR01AI044840 · NIAID · JOHNS HOPKINS UNIVERSITY · PI TOGIAS, ALKIS G. · 1999 to 2003
$1.9M
Airway Disease and Cockroach Exposure in Public HousingR18AI044840 · NIAID · JOHNS HOPKINS UNIVERSITY · PI BARNES, KATHLEEN C · 2004 to 2008
$1.8M
MOLECULAR GENETIC ANALYSIS ASTHMAU01HL049612 · NHLBI · JOHNS HOPKINS UNIVERSITY · PI BEATY, TERRI H · 1992 to 2001
$1.7M
Intramural NIH HHSMedical Research CouncilNCRR NIH HHS G12 RR003048NCRR NIH HHS RR03048NHLBI NIH HHS HL072433NHLBI NIH HHS HL075417NHLBI NIH HHS HL087699NHLBI NIH HHS HL49612NHLBI NIH HHS R01 HL087699NHLBI NIH HHS R01 HL088133NHLBI NIH HHS U01 HL049612NHLBI NIH HHS U01 HL072433NHLBI NIH HHS U01 HL075417NIAID NIH HHS AI41040NIAID NIH HHS AI44840NIAID NIH HHS N01 AI050024NIAID NIH HHS R01 AI041040NIAID NIH HHS R01 AI044840NIAID NIH HHS R01 AI050024NIAID NIH HHS R18 AI044840NIAID NIH HHS U19 AI077439NIDA NIH HHS R01 DA005484NIEHS NIH HHS ES09606NIEHS NIH HHS P01 ES009606NIEHS NIH HHS R01 ES015794NIGMS NIH HHS S06GM08015.Wellcome Trust
6 · The paper itself

Abstract

backgroundAsthma is a complex disease characterized by striking ethnic disparities not explained entirely by environmental, social, cultural, or economic factors. Of the limited genetic studies performed on populations of African descent, notable differences in susceptibility allele frequencies have been observed.

objectivesWe sought to test the hypothesis that some genes might contribute to the profound disparities in asthma.

methodsWe performed a genome-wide association study in 2 independent populations of African ancestry (935 African American asthmatic cases and control subjects from the Baltimore-Washington, DC, area and 929 African Caribbean asthmatic subjects and their family members from Barbados) to identify single-nucleotide polymorphisms (SNPs) associated with asthma.

resultsA meta-analysis combining these 2 African-ancestry populations yielded 3 SNPs with a combined P value of less than 10(-5) in genes of potential biologic relevance to asthma and allergic disease: rs10515807, mapping to the alpha-1B-adrenergic receptor (ADRA1B) gene on chromosome 5q33 (3.57 x 10(-6)); rs6052761, mapping to the prion-related protein (PRNP) gene on chromosome 20pter-p12 (2.27 x 10(-6)); and rs1435879, mapping to the dipeptidyl peptidase 10 (DPP10) gene on chromosome 2q12.3-q14.2. The generalizability of these findings was tested in family and case-control panels of United Kingdom and German origin, respectively, but none of the associations observed in the African groups were replicated in these European studies. Evidence for association was also examined in 4 additional case-control studies of African Americans; however, none of the SNPs implicated in the discovery population were replicated.

conclusionsThis study illustrates the complexity of identifying true associations for a complex and heterogeneous disease, such as asthma, in admixed populations, especially populations of African descent.

Indexed as

Genome-Wide Association StudyAdultAsthmaBarbadosBlack or African AmericanBlack PeopleFemaleGenetic Predisposition to DiseaseGenotypeHumansMaleMiddle AgedPolymorphism, Single Nucleotide

Identifiers

PMID19910028
PMCPMC3606015
OpenAlexW2104775278

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.