ArticleNucleic acids research2010
The Proteomics Identifications database: 2010 update.
Article in Nucleic acids research, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 115 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
115 citing papers in PubMed.
- Identification of novel paracrine therapeutic targets in peritoneal metastases through integrative proteotranscriptomic analysis of ascites.Molecular cancer · 2026Article
- HBFP: a new repository for human body fluid proteome.Database : the journal of biological databases and curation · 2021Article
- Perturbations of the Proteome and of Secreted Metabolites in Primary Astrocytes from the hSOD1(G93A) ALS Mouse Model.International journal of molecular sciences · 2021Article
- Nucleolin Rescues TDP-43 Toxicity in Yeast and Human Cell Models.Frontiers in cellular neuroscience · 2021Article
- PhDHS Is Involved in Chloroplast Development in Petunia.Frontiers in plant science · 2019Article
- The identification of carbon dioxide mediated protein post-translational modifications.Nature communications · 2018Article
- The Sharpin interactome reveals a role for Sharpin in lamellipodium formation via the Arp2/3 complex.Journal of cell science · 2017Article
- Proteomes and Ubiquitylomes Analysis Reveals the Involvement of Ubiquitination in Protein Degradation in Petunias.Plant physiology · 2017Article
- GAPP: A Proteogenomic Software for Genome Annotation and Global Profiling of Post-translational Modifications in Prokaryotes.Molecular & cellular proteomics : MCP · 2016Article
- Comparing isogenic strains of Beijing genotype Mycobacterium tuberculosis after acquisition of Isoniazid resistance: A proteomics approach.Proteomics · 2016Article
- 2016 update of the PRIDE database and its related tools.Nucleic acids research · 2016Article
- Honey Bee Infecting Lake Sinai Viruses.Viruses · 2015Article
- Role of the Tau N-terminal region in microtubule stabilization revealed by new endogenous truncated forms.Scientific reports · 2015Article
- Data for chicken semen proteome and label free quantitative analyses displaying sperm quality biomarkers.Data in brief · 2014Article
- Data in support of peptidomic analysis of spermatozoa during epididymal maturation.Data in brief · 2014Article
- A simple peak detection and label-free quantitation algorithm for chromatography-mass spectrometry.BMC bioinformatics · 2014Article
- Article
- Phosphoproteomic Analyses Reveal Early Signaling Events in the Osmotic Stress Response.Plant physiology · 2014Article
- Confident and sensitive phosphoproteomics using combinations of collision induced dissociation and electron transfer dissociation.Journal of proteomics · 2014Article
- Open source libraries and frameworks for mass spectrometry based proteomics: a developer's perspective.Biochimica et biophysica acta · 2014Review
55 more citing papers are in PubMed but not listed here.
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
8 authors.
Funding
Abstract
The Proteomics Identifications database (PRIDE, http://www.ebi.ac.uk/pride) at the European Bioinformatics Institute has become one of the main repositories of mass spectrometry-derived proteomics data. For the last 2 years, PRIDE data holdings have grown substantially, comprising 60 different species, more than 2.5 million protein identifications, 11.5 million peptides and over 50 million spectra by September 2009. We here describe several new and improved features in PRIDE, including the revised submission process, which now includes direct submission of fragment ion annotations. Correspondingly, it is now possible to visualize spectrum fragmentation annotations on tandem mass spectra, a key feature for compliance with journal data submission requirements. We also describe recent developments in the PRIDE BioMart interface, which now allows integrative queries that can join PRIDE data to a growing number of biological resources such as Reactome, Ensembl, InterPro and UniProt. This ability to perform extremely powerful across-domain queries will certainly be a cornerstone of future bioinformatics analyses. Finally, we highlight the importance of data sharing in the proteomics field, and the corresponding integration of PRIDE with other databases in the ProteomExchange consortium.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.