ArticleBMC genomics2009
An expression database for roots of the model legume Medicago truncatula under salt stress.
Article in BMC genomics, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.
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31 citing papers in PubMed.
- Silencing of SlERF.F5 affects tolerance to drought, salt and low-temperature stresses in tomato.BMC genomics · 2025Article
- Identification and expression analysis of theFrontiers in plant science · 2025Article
- Genome-wide identification of SINA gene family in Medicago truncatula and functional analysis of MtSINAL7.Molecular biology reports · 2024Article
- Genome-wide characterization and expression profiling of E2F/DP gene family members in response to abiotic stress in tomato (Solanum lycopersicum L.).BMC plant biology · 2024Article
- SPL12 RegulatesPlants (Basel, Switzerland) · 2022Article
- Genome-wide analysis of autophagy-related genes in Medicago truncatula highlights their roles in seed development and response to drought stress.Scientific reports · 2021Article
- MtNPF6.5 mediates chloride uptake and nitrate preference in Medicago roots.The EMBO journal · 2021Article
- Genome-Wide Identification and Expression Analysis of the Aux/IAA and Auxin Response Factor Gene Family inInternational journal of molecular sciences · 2021Article
- Molecular responses of legumes to abiotic stress: post-translational modifications of proteins and redox signaling.Journal of experimental botany · 2021Review
- Salt Stress Enhances Early Symbiotic Gene Expression inMolecular plant-microbe interactions : MPMI · 2021Article
- Genome-wide identification and functional characterization of the PheE2F/DP gene family in Moso bamboo.BMC plant biology · 2021Article
- De-novo transcriptome analysis unveils differentially expressed genes regulating drought and salt stress response in Panicum sumatrense.Scientific reports · 2020Article
- Dual role of MdSND1 in the biosynthesis of lignin and in signal transduction in response to salt and osmotic stress in apple.Horticulture research · 2020Article
- Article
- Identification of Alternative Mitochondrial Electron Transport Pathway Components in Chickpea Indicates a Differential Response to Salinity Stress between Cultivars.International journal of molecular sciences · 2020Article
- Genome-wide association analysis of salinity responsive traits in Medicago truncatula.Plant, cell & environment · 2019Article
- In silico identification and expression analysis of superoxide dismutase (SOD) gene family in3 Biotech · 2018Article
- Transcriptome analysis of microRNA156 overexpression alfalfa roots under drought stress.Scientific reports · 2018Article
- Genome-Wide Identification of Glyoxalase Genes inFrontiers in plant science · 2017Article
- Genome-Wide Association Mapping of Loci Associated with Plant Growth and Forage Production under Salt Stress in Alfalfa (Frontiers in plant science · 2017Article
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4 authors.
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No grant is acknowledged in the PubMed record.
Abstract
backgroundMedicago truncatula is a model legume whose genome is currently being sequenced by an international consortium. Abiotic stresses such as salt stress limit plant growth and crop productivity, including those of legumes. We anticipate that studies on M. truncatula will shed light on other economically important legumes across the world. Here, we report the development of a database called MtED that contains gene expression profiles of the roots of M. truncatula based on time-course salt stress experiments using the Affymetrix Medicago GeneChip. Our hope is that MtED will provide information to assist in improving abiotic stress resistance in legumes. DESCRIPTION: The results of our microarray experiment with roots of M. truncatula under 180 mM sodium chloride were deposited in the MtED database. Additionally, sequence and annotation information regarding microarray probe sets were included. MtED provides functional category analysis based on Gene and GeneBins Ontology, and other Web-based tools for querying and retrieving query results, browsing pathways and transcription factor families, showing metabolic maps, and comparing and visualizing expression profiles. Utilities like mapping probe sets to genome of M. truncatula and In-Silico PCR were implemented by BLAT software suite, which were also available through MtED database.
conclusionMtED was built in the PHP script language and as a MySQL relational database system on a Linux server. It has an integrated Web interface, which facilitates ready examination and interpretation of the results of microarray experiments. It is intended to help in selecting gene markers to improve abiotic stress resistance in legumes. MtED is available at http://bioinformatics.cau.edu.cn/MtED/.
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