Evidence map›Paper›PMID 19905340›Full record

ArticlePhysical review. E, Statistical, nonlinear, and soft matter physics2009

Computational analysis of the tether-pulling experiment to probe plasma membrane-cytoskeleton interaction in cells.

Kristopher R Schumacher, Aleksander S Popel, Bahman Anvari, William E Brownell, Alexander A Spector

Abstract read
In one paragraph

Article in Physical review. E, Statistical, nonlinear, and soft matter physics, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Cell cytoskeleton and tether extraction.Biophysical journal · 2011
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Kristopher R SchumacherDepartment of Biomedical Engineering, Johns Hopkins University, Baltimore, Maryland 21205, USA.
Aleksander S Popel
Bahman Anvari
William E Brownell
Alexander A Spector

Funding

INTRACOCHLEAR ELECTROCHEMICAL GRADIENTSR01DC000354 · NIDCD · JOHNS HOPKINS UNIVERSITY · PI BROWNELL, WILLIAM E, FARRELL, BRENDA FRANCES · 1989 to 2018
$10.4M
Training Program in Hearing and BalanceT32DC000023 · NIDCD · JOHNS HOPKINS UNIVERSITY · PI CULLEN, KATHLEEN E · 1989 to 2025
$8.7M
MECHANICS OF THE COCHLEAR OUTER HAIR CELLR01DC002775 · NIDCD · BAYLOR COLLEGE OF MEDICINE · PI BROWNELL, WILLIAM E · 1996 to 2011
$5.6M
MODULATION RESPONSE IN THE INFERIOR COLLICULUSF32DC000354 · NIDCD · UNIVERSITY OF CALIFORNIA SAN FRANCISCO · PI KVALE, MARK N · 1999 to 2001
$96k
NIDCD NIH HHS DC000023NIDCD NIH HHS DC00354NIDCD NIH HHS DC02775NIDCD NIH HHS F32 DC000354NIDCD NIH HHS R01 DC000354NIDCD NIH HHS R01 DC002775NIDCD NIH HHS T32 DC000023
6 · The paper itself

Abstract

Tethers are thin membrane tubes that can be formed when relatively small and localized forces are applied to cellular membranes and lipid bilayers. Tether pulling experiments have been used to better understand the fine membrane properties. These include the interaction between the plasma membrane and the underlying cytoskeleton, which is an important factor affecting membrane mechanics. We use a computational method aimed at the interpretation and design of tether pulling experiments in cells with a strong membrane-cytoskeleton attachment. In our model, we take into account the detailed information in the topology of bonds connecting the plasma membrane and the cytoskeleton. We compute the force-dependent piecewise membrane deflection and bending as well as modes of stored energy in three major regions of the system: body of the tether, membrane-cytoskeleton attachment zone, and the transition zone between the two. We apply our method to three cells: cochlear outer hair cells (OHCs), human embryonic kidney (HEK) cells, and Chinese hamster ovary (CHO) cells. OHCs have a special system of pillars connecting the membrane and the cytoskeleton, and HEK and CHO cells have the membrane-cytoskeleton adhesion arrangement via bonds (e.g., PIP2), which is common to many other cells. We also present a validation of our model by using experimental data on CHO and HEK cells. The proposed method can be an effective tool in the analyses of experiments to probe the properties of cellular membranes.

Indexed as

Models, BiologicalAnimalsBiomechanical PhenomenaCell AdhesionCell MembraneCell ShapeCHO CellsCochleaComputer SimulationCricetinaeCricetulusCytoskeletonHair Cells, Auditory, OuterHumansLinear ModelsReproducibility of Results

Identifiers

PMID19905340
PMCPMC4990357

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.