Evidence map›Paper›PMID 19904982›Full record

ArticleJournal of the American Chemical Society2009

Evidence of diketopiperazine and oxazolone structures for HA b2+ ion.

Brittany R Perkins, Julia Chamot-Rooke, Sung Hwan Yoon, Ashley C Gucinski, Arpád Somogyi, Vicki H Wysocki

Abstract read
In one paragraph

Article in Journal of the American Chemical Society, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed.

  1. Article
  2. Article
  3. Gas Phase Fragmentation Behavior of Proline in MacrocyclicJournal of the American Society for Mass Spectrometry · 2023
    Article
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  7. Spectroscopic Evidence for Lactam Formation in Terminal Ornithine bJournal of the American Society for Mass Spectrometry · 2019
    Article
  8. Article
  9. Participation of C-H Protons in the Dissociation of a Proton Deficient Dipeptide.Journal of the American Society for Mass Spectrometry · 2017
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Brittany R PerkinsDepartment of Chemistry and Biochemistry, University of Arizona, Tucson, Arizona 85721, USA.
Julia Chamot-Rooke
Sung Hwan Yoon
Ashley C Gucinski
Arpád Somogyi
Vicki H Wysocki

Funding

Influence of Peptide Structure on DissociationR01GM051387 · NIGMS · VIRGINIA COMMONWEALTH UNIVERSITY · PI WYSOCKI, VICKI H. · 1994 to 2010
$2.4M
NIGMS NIH HHS R01 GM051387PHS HHS GMR01-51387
6 · The paper itself

Abstract

Peptide fragmentation can lead to an oxazolone or diketopiperazine b(2)(+) ion structure. IRMPD spectroscopy combined with computational modeling and gas-phase H/D exchange was used to study the structure of the b(2)(+) ion from protonated HAAAA. The experimental spectrum of the b(2)(+) ion matches both the experimental spectrum for the protonated cyclic dipeptide HA (a commercial diketopiperazine) and the theoretical spectrum for a diketopiperazine protonated at the imidazole pi nitrogen. A characteristic band at 1875 cm(-1) and increased abundance of the peaks at 1619 and 1683 cm(-1) indicate a second population corresponding to an oxazolone species. H/D exchange also shows a mixture of two populations consistent with a mixture of b(2)(+) ion diketopiperazine and oxazolone structures.

Indexed as

Deuterium Exchange MeasurementDiketopiperazinesDipeptidesModels, MolecularOxazolonePeptides, CyclicPhotonsProtein ConformationSpectrum AnalysisDiketopiperazinesDipeptidesOxazolonePeptides, Cyclic

Identifiers

PMID19904982
PMCPMC3477237

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.