Evidence map›Paper›PMID 19903474›Full record

ReviewFEBS letters2010

Distinct genetic code expansion strategies for selenocysteine and pyrrolysine are reflected in different aminoacyl-tRNA formation systems.

Jing Yuan, Patrick O'Donoghue, Alex Ambrogelly, Sarath Gundllapalli, R Lynn Sherrer, Sotiria Palioura, Miljan Simonović, Dieter Söll

Abstract readReview
In one paragraph

Review in FEBS letters, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 77 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Review
  6. Codon usage bias.Molecular biology reports · 2022
    Review
  7. Unconventional genetic code systems in archaea.Frontiers in microbiology · 2022
    Review
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Review
  16. Article
  17. Structure of the Pseudomonas aeruginosa transamidosome reveals unique aspects of bacterial tRNA-dependent asparagine biosynthesis.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  18. Polyspecific pyrrolysyl-tRNA synthetases from directed evolution.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
  19. Recoding the genetic code with selenocysteine.Angewandte Chemie (International ed. in English) · 2014
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Jing YuanDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06520-8114, USA. jing.yuan@yale.edu
Patrick O'Donoghue
Alex Ambrogelly
Sarath Gundllapalli
R Lynn Sherrer
Sotiria Palioura
Miljan Simonović
Dieter Söll
Yale University · USUniversity of Illinois Chicago · US

Funding

TRANSFER RNAR01GM022854 · NIGMS · YALE UNIVERSITY · PI SOLL, DIETER · 1985 to 2016
$21.3M
NIGMS NIH HHS R01 GM022854
6 · The paper itself

Abstract

Selenocysteine and pyrrolysine, known as the 21st and 22nd amino acids, are directly inserted into growing polypeptides during translation. Selenocysteine is synthesized via a tRNA-dependent pathway and decodes UGA (opal) codons. The incorporation of selenocysteine requires the concerted action of specific RNA and protein elements. In contrast, pyrrolysine is ligated directly to tRNA(Pyl) and inserted into proteins in response to UAG (amber) codons without the need for complex re-coding machinery. Here we review the latest updates on the structure and mechanisms of molecules involved in Sec-tRNA(Sec) and Pyl-tRNA(Pyl) formation as well as the distribution of the Pyl-decoding trait.

Indexed as

Genetic CodeTransfer RNA AminoacylationCodon, TerminatorLysineRNA, Transfer, Amino AcylSelenocysteineCodon, TerminatorLysinepyrrolysineRNA, Transfer, Amino AcylSelenocysteineselenocysteinyl-tRNA

Identifiers

PMID19903474
PMCPMC2795046
OpenAlexW2032464327

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.