Evidence map›Paper›PMID 19903339›Full record

ArticleBMC medical genomics2009

Gene expression profiling in sinonasal adenocarcinoma.

Dominique Tripodi, Sylvia Quéméner, Karine Renaudin, Christophe Ferron, Olivier Malard, Isabelle Guisle-Marsollier, Véronique Sébille-Rivain, Christian Verger, Christian Géraut, Catherine Gratas-Rabbia-Ré

Open access · goldAbstract read
In one paragraph

Article in BMC medical genomics, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 39 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 1 country.

Dominique TripodiInserm, UMR 892, Nantes F-44007, France. dominique.tripodi@chu-nantes.fr
Sylvia Quéméner
Karine Renaudin
Christophe Ferron
Olivier Malard
Isabelle Guisle-Marsollier
Véronique Sébille-Rivain
Christian Verger
Christian Géraut
Catherine Gratas-Rabbia-Ré
Nantes Université · FRCentre Hospitalier Universitaire de Nantes · FRCentre d'Investigation Clinique de Nantes · FRHôtel-Dieu de Paris · FRInserm · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundSinonasal adenocarcinomas are uncommon tumors which develop in the ethmoid sinus after exposure to wood dust. Although the etiology of these tumors is well defined, very little is known about their molecular basis and no diagnostic tool exists for their early detection in high-risk workers.

methodsTo identify genes involved in this disease, we performed gene expression profiling using cancer-dedicated microarrays, on nine matched samples of sinonasal adenocarcinomas and non-tumor sinusal tissue. Microarray results were validated by quantitative RT-PCR and immunohistochemistry on two additional sets of tumors.

resultsAmong the genes with significant differential expression we selected LGALS4, ACS5, CLU, SRI and CCT5 for further exploration. The overexpression of LGALS4, ACS5, SRI, CCT5 and the downregulation of CLU were confirmed by quantitative RT-PCR. Immunohistochemistry was performed for LGALS4 (Galectin 4), ACS5 (Acyl-CoA synthetase) and CLU (Clusterin) proteins: LGALS4 was highly up-regulated, particularly in the most differentiated tumors, while CLU was lost in all tumors. The expression of ACS5, was more heterogeneous and no correlation was observed with the tumor type.

conclusionWithin our microarray study in sinonasal adenocarcinoma we identified two proteins, LGALS4 and CLU, that were significantly differentially expressed in tumors compared to normal tissue. A further evaluation on a new set of tissues, including precancerous stages and low grade tumors, is necessary to evaluate the possibility of using them as diagnostic markers.

Indexed as

Ethmoid SinusAdenocarcinomaAgedClusterinCoenzyme A LigasesFemaleGalectin 4Gene Expression ProfilingHumansImmunohistochemistryMaleMiddle AgedNeoplasm ProteinsOligonucleotide Array Sequence AnalysisParanasal Sinus NeoplasmsACSL5 protein, humanCLU protein, humanClusterinCoenzyme A LigasesGalectin 4LGALS4 protein, humanNeoplasm Proteins

Identifiers

PMID19903339
PMCPMC2780459
OpenAlexW2123863521

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.