ArticleGenome biology2009
Construction of a high-resolution genetic linkage map and comparative genome analysis for the reef-building coral Acropora millepora.
Article in Genome biology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.
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Who cites it
28 citing papers in PubMed, 58 citations in OpenAlex.
- Chromosome-level genome assemblies and genetic maps reveal heterochiasmy and macrosynteny in endangered Atlantic Acropora.BMC genomics · 2024Article
- Pan-evolutionary and regulatory genome architecture delineated by an integrated macro- and microsynteny approach.Nature protocols · 2024Review
- Mixed Patterns of Intergenerational DNA Methylation Inheritance in Acropora.Molecular biology and evolution · 2024Article
- Construction of a High-Density Genetic Linkage Map and QTL Mapping for Growth-Related Traits in Takifugu bimaculatus.Marine biotechnology (New York, N.Y.) · 2020Article
- Variation in recombination frequency and distribution across eukaryotes: patterns and processes.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2017Review
- A Genome-Wide Association Study Identifies the Genomic Region Associated with Shell Color in Yesso Scallop, Patinopecten yessoensis.Marine biotechnology (New York, N.Y.) · 2017Article
- Recombination in the eggs and sperm in a simultaneously hermaphroditic vertebrate.Proceedings. Biological sciences · 2016Article
- Genetic markers for antioxidant capacity in a reef-building coral.Science advances · 2016Article
- Construction of Ultradense Linkage Maps with Lep-MAP2: Stickleback F2 Recombinant Crosses as an Example.Genome biology and evolution · 2015Article
- Quantitative high resolution melting: two methods to determine SNP allele frequencies from pooled samples.BMC genetics · 2015Article
- Coral-zooxanthellae meta-transcriptomics reveals integrated response to pollutant stress.BMC genomics · 2014Article
- A high-density genetic map of cucumber derived from Specific Length Amplified Fragment sequencing (SLAF-seq).Frontiers in plant science · 2014Article
- Construction and analysis of high-density linkage map using high-throughput sequencing data.PloS one · 2014Article
- Genome-wide mapping of virulence in brown planthopper identifies loci that break down host plant resistance.PloS one · 2014Article
- Large-scale development of gene-associated single-nucleotide polymorphism markers for molluscan population genomic, comparative genomic, and genome-wide association studies.DNA research : an international journal for rapid publication of reports on genes and genomes · 2014Article
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- Genotype - environment correlations in corals from the Great Barrier Reef.BMC genetics · 2013Article
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- Transcriptome sequencing and characterization for the sea cucumber Apostichopus japonicus (Selenka, 1867).PloS one · 2012Article
- Development of 101 gene-based single nucleotide polymorphism markers in sea cucumber, Apostichopus japonicus.International journal of molecular sciences · 2012Article
Corrections and comments
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Authors and funding
4 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundWorldwide, coral reefs are in decline due to a range of anthropogenic disturbances, and are now also under threat from global climate change. Virtually nothing is currently known about the genetic factors that might determine whether corals adapt to the changing climate or continue to decline. Quantitative genetics studies aiming to identify the adaptively important genomic loci will require a high-resolution genetic linkage map. The phylogenetic position of corals also suggests important applications for a coral genetic map in studies of ancestral metazoan genome architecture.
resultsWe constructed a high-resolution genetic linkage map for the reef-building coral Acropora millepora, the first genetic map reported for any coral, or any non-Bilaterian animal. More than 500 single nucleotide polymorphism (SNP) markers were developed, most of which are transferable in populations from Orpheus Island and Great Keppel Island. The map contains 429 markers (393 gene-based SNPs and 36 microsatellites) distributed in 14 linkage groups, and spans 1,493 cM with an average marker interval of 3.4 cM. Sex differences in recombination were observed in a few linkage groups, which may be caused by haploid selection. Comparison of the coral map with other metazoan genomes (human, nematode, fly, anemone and placozoan) revealed synteny regions.
conclusionsOur study develops a framework that will be essential for future studies of adaptation in coral and it also provides an important resource for future genome sequence assembly and for comparative genomics studies on the evolution of metazoan genome structure.
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