Evidence map›Paper›PMID 19898476›Full record

ArticleNature structural & molecular biology2009

Basis of substrate binding and conservation of selectivity in the CLC family of channels and transporters.

Alessandra Picollo, Mattia Malvezzi, Jon C D Houtman, Alessio Accardi

Abstract read
In one paragraph

Article in Nature structural & molecular biology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 65 papers.

0numbers the graph read from it
0cells of the map it votes in
65citing papers in PubMed
4.0field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

65 citing papers in PubMed, 110 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Fluoride Transport and Inhibition Across CLC Transporters.Handbook of experimental pharmacology · 2024
    Article
  5. The Role of Chloride Channels in Plant Responses to NaCl.International journal of molecular sciences · 2023
    Review
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Review
  12. An endoplasmic reticulum-localized cytochromeProceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  13. Article
  14. Divergent CleLife · 2020
    Article
  15. Article
  16. Article
  17. Mutation of external glutamate residue reveals a new intermediate transport state and anion binding site in a CLC ClProceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  18. New Insights into the Mechanism of NOJournal of the American Society of Nephrology : JASN · 2019
    Article
  19. Article
  20. A CLC-type FNature structural & molecular biology · 2018
    Article

5 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Alessandra PicolloDepartment of Molecular Physiology and Biophysics, Roy J. and Lucille A. Carver College of Medicine, University of Iowa, Iowa City, Iowa, USA.
Mattia Malvezzi
Jon C D Houtman
Alessio Accardi
University of Iowa · US

Funding

Structure and function of chloride channels and transportersR01GM085232 · NIGMS · WEILL MEDICAL COLL OF CORNELL UNIV · PI ACCARDI, ALESSIO · 2009 to 2013
$1.7M
NIGMS NIH HHS 1R01GM085232NIGMS NIH HHS R01 GM085232
6 · The paper itself

Abstract

Ion binding to secondary active transporters triggers a cascade of conformational rearrangements resulting in substrate translocation across cellular membranes. Despite the fundamental role of this step, direct measurements of binding to transporters are rare. We investigated ion binding and selectivity in CLC-ec1, a H(+)-Cl(-) exchanger of the CLC family of channels and transporters. Cl(-) affinity depends on the conformation of the protein: it is highest with the extracellular gate removed and weakens as the transporter adopts the occluded configuration and with the intracellular gate removed. The central ion-binding site determines selectivity in CLC transporters and channels. A serine-to-proline substitution at this site confers NO(3)(-) selectivity upon the Cl(-)-specific CLC-ec1 transporter and CLC-0 channel. We propose that CLC-ec1 operates through an affinity-switch mechanism and that the bases of substrate specificity are conserved in the CLC channels and transporters.

Indexed as

Amino Acid SubstitutionAnionsBinding SitesChloride ChannelsChlorineEscherichia coli ProteinsModels, MolecularMutagenesis, Site-DirectedNitratesProtein BindingProtein ConformationProtein Structure, TertiarySubstrate SpecificityAnionsChloride ChannelsChlorineClC protein, E coliEscherichia coli ProteinsNitrates

Identifiers

PMID19898476
PMCPMC2920496
OpenAlexW2141868802

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.