Evidence map›Paper›PMID 19895345›Full record

ArticleAssay and drug development technologies2009

Quantification of lipid droplets and associated proteins in cellular models of obesity via high-content/high-throughput microscopy and automated image analysis.

Patrick M McDonough, Ramses M Agustin, Randall S Ingermanson, Patricia A Loy, Benjamin M Buehrer, James B Nicoll, Natalie L Prigozhina, Ivana Mikic, Jeffrey H Price

Abstract read
In one paragraph

Article in Assay and drug development technologies, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
2.8field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 51 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

Patrick M McDonoughVala Sciences Inc., San Diego, California 92109, USA. pmcdonough@valasciences.com
Ramses M Agustin
Randall S Ingermanson
Patricia A Loy
Benjamin M Buehrer
James B Nicoll
Natalie L Prigozhina
Ivana Mikic
Jeffrey H Price
Vala Sciences (United States) · USSanford Burnham Prebys Medical Discovery Institute · USTriangle · USInstitute for Medical Research · US

Funding

HT Image Assay of Lipid Droplet Formation in Human AdipocytesR43DK074333 · NIDDK · VALA SCIENCES, INC. · PI MCDONOUGH, PATRICK M · 2006 to 2006
$143k
NIDDK NIH HHS 1R43DK074333NIDDK NIH HHS R43 DK074333
6 · The paper itself

Abstract

Intracellular lipid droplets are associated with a myriad of afflictions including obesity, fatty liver disease, coronary artery disease, and infectious diseases (eg, HCV and tuberculosis). To develop high-content analysis (HCA) techniques to analyze lipid droplets and associated proteins, primary human preadipocytes were plated in 96-well dishes in the presence of rosiglitazone (rosi), a PPAR-(c) agonist that promotes adipogenesis. The cells were then labeled for nuclei, lipid droplets, and proteins such as perilipin, protein kinase C (PKC), and hormone-sensitive lipase (HSL). The cells were imaged via automated digital microscopy and algorithms were developed to quantify lipid droplet (Lipid Droplet algorithm) and protein expression and colocalization (Colocalization algorithm). The algorithms, which were incorporated into Vala Science Inc's CyteSeer((R)) image cytometry program, quantified the rosi-induced increases in lipid droplet number, size, and intensity, and the expression of perilipin with exceptional consistency (Z' values of 0.54-0.71). Regarding colocalization with lipid droplets, Pearson's correlation coefficients of 0.38 (highly colocalized), 0.16 (moderate), and -0.0010 (random) were found for perilipin, PKC, and HSL, respectively. For hepatocytes (AML12, HuH-7, and primary cells), the algorithms also quantified the stimulatory and inhibitory effect of oleic acid and triacsin C on lipid droplets (Z's > 0.50) and ADFP expression/colocalization. Oleic acid-induced lipid droplets in HeLa cells and macrophages (THP-1) were also well quantified. The results suggest that HCA techniques can be utilized to quantify lipid droplets and associated proteins in many cell models relevant to a variety of diseases.

Indexed as

AdipocytesAlgorithmsCell LineData Interpretation, StatisticalDrug DiscoveryDrug Evaluation, PreclinicalFlow CytometryHepatocytesHumansImage Processing, Computer-AssistedLipidsLipoproteinsMicroscopyModels, BiologicalObesityProteinsLipidsLipoproteinsProteinsTriglycerides

Identifiers

PMID19895345
PMCPMC2872546
OpenAlexW2052632418

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.