Evidence map›Paper›PMID 19894069›Full record

ArticleNeurogenetics2010

Atp10a, a gene adjacent to the PWS/AS gene cluster, is not imprinted in mouse and is insensitive to the PWS-IC.

Amanda J DuBose, Karen A Johnstone, Emily Y Smith, Ryan A E Hallett, James L Resnick

Abstract read
PubMed Publisher
In one paragraph

Article in Neurogenetics, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed, 1 pooled it
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 1 synthesis or guideline pooled it, 44 citations in OpenAlex.

  1. Recommendations for the investigation of animal models of Prader-Willi syndrome.Mammalian genome : official journal of the International Mammalian Genome Society · 2013
    Guideline
  2. Trial
  3. Article
  4. Species-Specific Parent-Of-Origin Expression of Adam23 in the Mammalian Brain.Genes to cells : devoted to molecular & cellular mechanisms · 2026
    Article
  5. Article
  6. Frontiers in cell and developmental biology · 2022
    Article
  7. ZFP57 dictates allelic expression switch of target imprinted genes.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Review
  13. The interstitial duplication 15q11.2-q13 syndrome includes autism, mild facial anomalies and a characteristic EEG signature.Autism research : official journal of the International Society for Autism Research · 2013
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. The neurobiology of mouse models syntenic to human chromosome 15q.Journal of neurodevelopmental disorders · 2011
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Amanda J DuBoseDepartment of Molecular Genetics and Microbiology, University of Florida College of Medicine, Gainesville, Florida, 32610-0266, USA.
Karen A Johnstone
Emily Y Smith
Ryan A E Hallett
James L Resnick
University of Florida · USUniversity of Exeter · GB

Funding

GENETIC COMPLEMENTATION OF A MOUSE MODEL FOR PWSR01HD037872 · NICHD · UNIVERSITY OF FLORIDA · PI RESNICK, JAMES L · 1999 to 2010
$2.2M
NICHD NIH HHS HD037872
6 · The paper itself

Abstract

Mutations affecting a cluster of coordinately regulated imprinted genes located at 15q11-q13 underlie both Prader-Willi syndrome (PWS) and Angelman syndrome (AS). Disruption of the predominately maternally expressed UBE3A locus is sufficient to meet diagnostic criteria for AS. However, AS patients with a deletion of the entire PWS/AS locus often have more severe traits than patients with point mutations in UBE3A suggesting that other genes contribute to the syndrome. ATP10A resides 200 kb telomeric to UBE3A and is of uncertain imprinted status. An initial report indicated bialleleic expression of the murine Atp10a in all tissues, but a subsequent report suggests that Atp10a is predominantly maternally expressed in the hippocampus and olfactory bulb. To resolve this discrepancy, we investigated Atp10a allelic expression in the brain, DNA methylation status, and sensitivity to mutations of the PWS imprinting center, an element required for imprinted gene expression in the region. We report that Atp10a is biallelically expressed in both the newborn and adult brain, and Atp10a allelic expression is insensitive to deletion or mutation of the PWS imprinting center. The CpG island associated with Atp10a is hypomethylated, a result consistent with the notion that Atp10a is not an imprinted gene.

Indexed as

Genomic ImprintingMultigene FamilyAdenosine TriphosphatasesAngelman SyndromeAnimalsCpG IslandsDNA MethylationFemaleHumansMaleMembrane Transport ProteinsMiceMice, Inbred C57BLPolymorphism, GeneticPrader-Willi SyndromeSequence Analysis, DNAAdenosine TriphosphatasesATP10a protein, mouseMembrane Transport Proteins

Identifiers

PMID19894069
OpenAlexW2066885958

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.